View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_33 (Length: 227)
Name: NF2600_low_33
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6636871 - 6637096
Alignment:
| Q |
1 |
taattaaatcacacacgttgactcaaacccaaagtgttcttagttgaaggttcccttaaaatttataacatttgcaattcctatctgatgaaattccaat |
100 |
Q |
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| T |
6636871 |
taattaaatcacacacgttgactcaaacccaaagtgttcttagctgaaggttcccttaaaatttataacatttgcaattcctatctgatgaaattccaat |
6636970 |
T |
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| Q |
101 |
acatcatcattcatcaaaactttataagagaaaattacaagcaagtcnnnnnnnnnnnnntgtttcctgcgaaaattccgcaggtaaagtcgctgcaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
6636971 |
acatcatcattcatcaaaactttataagagaaaattacaagcaaggc-aaaaaataaaaatgtttcctgcaaaaattccgcaggtaaagtcgctgcaaag |
6637069 |
T |
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| Q |
201 |
ctatttccgcaagtaattcctcagcaa |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6637070 |
ctatttccgcaagtaattcctcagcaa |
6637096 |
T |
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