View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_4 (Length: 650)

Name: NF2600_low_4
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_4
NF2600_low_4
[»] chr8 (1 HSPs)
chr8 (13-636)||(4468224-4468849)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 636
Target Start/End: Complemental strand, 4468849 - 4468224
Alignment:
Q  13 gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468849 gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata 4468750  T
Q  113 aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagactgacaaagggttcgttacata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4468749 aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagattgacaaagggttcgttacata 4468650  T
Q  213 cgacgtttatcagtgttcagctccaacgactattacta-ctgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg 311  Q
    | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468649 ctacgtttatcagtgttcagctccaacgactattactagccgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg 4468550  T
Q  312 ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataaca-aagtgatgtttgaaagtag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4468549 ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataacataagtgatgtttgaaagtag 4468450  T
Q  411 aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468449 aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg 4468350  T
Q  511 cttatataaacaatatttctttacgttttagatcaaacaattaattaagataacgtgaatgtgcgattatcccgacaaatttagatacttcgtacataat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468349 cttatataaacaatatttctttacgttttagatcaaacaattaattaaaatcacgtgaatgtgcgattatcccgacaaatttagatacttcgtacataat 4468250  T
Q  611 agtattatactaattacacagatact 636  Q
    ||||||||||||||||||||||||||    
T  4468249 agtattatactaattacacagatact 4468224  T

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