View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_5 (Length: 650)

Name: NF2600_low_5
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_5
NF2600_low_5
[»] chr7 (1 HSPs)
chr7 (1-635)||(25788183-25788816)


Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 25788816 - 25788183
Alignment:
Q  1 tatatagattggaattgagatcatcaaagggtctgtccaaatttgagatgaaattattggaaagattcagatagaccagatagtcgaatctcaatatcca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25788816 tatatagattggaattgagatcatcaaagggtctttccaaatctgtgatgaaattattggaaagattcagataaaccagatagttgaatctcaatatcca 25788717  T
Q  101 gattggtattgctccatgaatgtagttgttggataagtctaggccattttagatggggttgatttctcatgaactttggaaattccctcaacttacaaga 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  25788716 gtttggtattgctccatgaatgtagttgttggataagtctaggccattt-agatggggttgatttctcaagaactttggaaactccatcaacttacaaga 25788618  T
Q  201 agctaacaacagatatttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788617 agctaacaacagatatttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaat 25788518  T
Q  301 gtatttaaactctgcagcctctgaatcatgtcaagccgcattgtgccattggtcaagccgcatcc-cacaaattattgtgcaacagcgataaatatcgaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||    
T  25788517 gtatttaaactctgcagcctctgaatcatgtcaagccgcattgtgccattgttcaagccgcatcctgtcaaattattgtgcaacagcgataaatatcgaa 25788418  T
Q  400 gttctttactcattctgaaagagggaagtgtaccaataaagttattgaatgataagtctaaatgaacaattacagtatattgtcaaatcctttatatttt 499  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||    
T  25788417 gttctttactcattctgaaagagggaagtgtagcaataaagttattgaatgataagtctaaatgaacaattacagtatactgtcaaatcctttata--tt 25788320  T
Q  500 taaggcaaacaaacgaccacaagtgtaaaaccaataaactaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgcggttatcgtctat 599  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25788319 taaggtaatcaaacgaccacaagtgtaaaaccaataaacaaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgctgttatcgtctat 25788220  T
Q  600 gttttgta-gaatagcatagccaggtaatgttatttt 635  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25788219 gttttgtaggaatagcatagccaggtaatgttatttt 25788183  T

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