View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_6 (Length: 617)

Name: NF2600_low_6
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_6
NF2600_low_6
[»] chr8 (10 HSPs)
chr8 (8-458)||(1361140-1361588)
chr8 (56-202)||(1350874-1351017)
chr8 (317-448)||(1350576-1350707)
chr8 (318-403)||(1344091-1344176)
chr8 (318-403)||(1355411-1355496)
chr8 (558-600)||(1360995-1361037)
chr8 (558-598)||(1350342-1350382)
chr8 (280-318)||(1350767-1350805)
chr8 (100-181)||(1344572-1344653)
chr8 (100-181)||(1354910-1354990)
[»] chr1 (1 HSPs)
chr1 (102-181)||(29051899-29051978)
[»] chr7 (2 HSPs)
chr7 (103-181)||(13590657-13590735)
chr7 (558-600)||(13590373-13590415)
[»] chr3 (1 HSPs)
chr3 (337-403)||(24618479-24618545)
[»] chr2 (1 HSPs)
chr2 (371-403)||(43364464-43364496)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 1361588 - 1361140
Alignment:
Q  8 ccaagaaaatatttccatgtaattattcacatttctccatgaagatgtcagcatgttaaatcaatgctaactttgctctttcttgagtgattattactaa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||||||||||||||    
T  1361588 ccaataaaatatttccatgtaattattcacatttctccatgaagatgtcagcatgttaaatcaatgctaactttgc---taattgagtgattattactaa 1361492  T
Q  108 ttataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaatacaagacttcacaagacc-aaacag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  1361491 ttataaattttcaaattttatctataaaacttgacaaacttgagcatttttaacattgagtaaccaaacagtaatacacgacttcacaagacctaaacag 1361392  T
Q  207 aaattgcagagagattaacataaaatgtgataatcaattgagtagaactagcacttgtctaaaagatttgctaataattgttgagaagagttttatccat 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1361391 aaattgcagagtgattaacataaaatgtgataatcaattgagtagaactagaactagtctaaaagatttgctaataattgttgagaagagttttatccat 1361292  T
Q  307 aaggttactcatccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttcttt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1361291 aaggttactcatccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttcttt 1361192  T
Q  407 gtcagtcattaagtcatgatcaatctcatcatcaaactcaactacaggaccc 458  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1361191 gtcagtcattaagtcatgatcaatctcatcatcaaactcaaccacaggaccc 1361140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 1351017 - 1350874
Alignment:
Q  56 cagcatgttaaatcaatgctaactttgctctttcttgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgaacatt 155  Q
    |||||||| |||||||||| ||||| ||||||    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  1351017 cagcatgtgaaatcaatgcaaacttcgctctt----gagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatt 1350922  T
Q  156 tttaacattgagaaaccaaacagtaataca-agacttcacaagaccaa 202  Q
    ||||||||| ||||||||||||||||||||   |||||||||||||||    
T  1350921 tttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaa 1350874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 317 - 448
Target Start/End: Complemental strand, 1350707 - 1350576
Alignment:
Q  317 atccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt 416  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||| ||||||    
T  1350707 atcccggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatt 1350608  T
Q  417 aagtcatgatcaatctcatcatcaaactcaac 448  Q
      ||| ||||||||||||||||||||||||||    
T  1350607 gggtcctgatcaatctcatcatcaaactcaac 1350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 1344176 - 1344091
Alignment:
Q  318 tccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttc 403  Q
    |||||||||||| ||  ||||||||||||||||||| |||||||||| | || ||||||||||||||| ||||||||||| |||||    
T  1344176 tccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttc 1344091  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 1355411 - 1355496
Alignment:
Q  318 tccctgtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttc 403  Q
    |||||||||||| ||  ||||||||||||||||||| |||||||||| | || ||||||||||||||| ||||||||||| |||||    
T  1355411 tccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttc 1355496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 1361037 - 1360995
Alignment:
Q  558 ccatcatttgatccattaataaaagacacaagctcttcaattg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1361037 ccatcatttgatccattaataaaagacacaagctcttcaattg 1360995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 1350382 - 1350342
Alignment:
Q  558 ccatcatttgatccattaataaaagacacaagctcttcaat 598  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  1350382 ccatcatttgatccattaataaaagacagaagctcttcaat 1350342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 1350805 - 1350767
Alignment:
Q  280 ataattgttgagaagagttttatccataaggttactcat 318  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  1350805 ataattgttgagaagagttttgttcataaggttactcat 1350767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 1344653 - 1344572
Alignment:
Q  100 attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa 181  Q
    |||||||||||| ||||||||||||  ||||| |  |||| | ||| ||||  | ||||||||||||||||||||| |||||    
T  1344653 attactaattatgaattttcaaattacatctagaggacttcaaaaatttgattagttttaacattgagaaaccaaatagtaa 1344572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 1354910 - 1354990
Alignment:
Q  100 attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa 181  Q
    |||||||||||| ||||||||||||  ||||| ||||||| ||||| |||| || || ||||||| |||||| ||| |||||    
T  1354910 attactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa 1354990  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 29051899 - 29051978
Alignment:
Q  102 tactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa 181  Q
    |||||||||| ||||||||||||  || || ||||||| ||||| |||| ||||| |||||||||||||||||| |||||    
T  29051899 tactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaa 29051978  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 13590735 - 13590657
Alignment:
Q  103 actaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa 181  Q
    |||||| || ||||||||||||  ||||||||||||  ||||| |||| |||||||| || |||||||||||| |||||    
T  13590735 actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaa 13590657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 13590415 - 13590373
Alignment:
Q  558 ccatcatttgatccattaataaaagacacaagctcttcaattg 600  Q
    ||||||||||||||||||||||| |||| |||||| |||||||    
T  13590415 ccatcatttgatccattaataaacgacaaaagctcgtcaattg 13590373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 24618545 - 24618479
Alignment:
Q  337 ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttc 403  Q
    |||||||||||||| || | |||||||| | || ||| ||||||||||| |||||||||||||||||    
T  24618545 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttc 24618479  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 43364464 - 43364496
Alignment:
Q  371 acaatttaatctgcgcgcaaattcttccacttc 403  Q
    ||||||||||||||| |||||||||||||||||    
T  43364464 acaatttaatctgcgggcaaattcttccacttc 43364496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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