View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_7 (Length: 604)
Name: NF2600_low_7
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 85 - 485
Target Start/End: Complemental strand, 5751718 - 5751305
Alignment:
| Q |
85 |
gtatgggtgttaaaccgatgatggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaaga |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5751718 |
gtatgggtgttaaaccgatgatggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaaga |
5751619 |
T |
|
| Q |
185 |
agttgttattgggcat---accaaaccttccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagct |
281 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5751618 |
agttgttattgggcataccaccaaaccttccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagct |
5751519 |
T |
|
| Q |
282 |
atgtgcagtgttaaggacatcttgag-ttatatttaatttatt---tatgtatgattcttatacccttagaaagttattttaattatatcctagtttc-- |
375 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5751518 |
atgtgcattgttaaggacatcttgagtttatatttaatttatttaatatgtatgattcttatacccttagaaagttattttaattatatcctagtttctt |
5751419 |
T |
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| Q |
376 |
-----nnnnnnnnnnnnngaatgatatatgttagttgttatgttannnnnnnnnnctcttttctagaacttcaactcaagacctttaactctatgaccct |
470 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5751418 |
tttttcttttttatttttgaatgatatatgttagttgttatgtta-tttttttttctcttttctagaacttcaactcaagacctttaactctatgactct |
5751320 |
T |
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| Q |
471 |
taactaatttttgtc |
485 |
Q |
| |
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||||||||||||||| |
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| T |
5751319 |
taactaatttttgtc |
5751305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5751979 - 5751894
Alignment:
| Q |
1 |
atgattgaaaaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatgatgt |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5751979 |
atgattgaaaaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatgatgt |
5751894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 5747390 - 5747318
Alignment:
| Q |
10 |
aaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatg |
82 |
Q |
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||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
5747390 |
aaagagtagttttgtttaacaatttataaaaagggttgaaaatatgattaaaaagttgtgctcggataagatg |
5747318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 5733520 - 5733437
Alignment:
| Q |
106 |
tggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaagaagttg |
189 |
Q |
| |
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||||||||| ||||||||||||| ||||||||| ||||||| |||||||| | |||||| ||||| || ||||||||||||| |
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| T |
5733520 |
tggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
5733437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 85 - 485
Target Start/End: Complemental strand, 18681756 - 18681343
Alignment:
| Q |
85 |
gtatgggtgttaaaccgatgatggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaaga |
184 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18681756 |
gtatgggtgttaaaccgatgatggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaaga |
18681657 |
T |
|
| Q |
185 |
agttgttattgggcat---accaaaccttccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagct |
281 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18681656 |
agttgttattgggcataccaccaaaccttccaataatataggtagttttagtatggtgtgtgaatgtttttgtcctaatttttaattctcttggtgagct |
18681557 |
T |
|
| Q |
282 |
atgtgcagtgttaaggacatcttgag-ttatatttaatttatt---tatgtatgattcttatacccttagaaagttattttaattatatcctagtttc-- |
375 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18681556 |
atgtgcattgttaaggacatcttgagtttatatttaatttatttaatatgtatgattcttatacccttagaaagttattttaattatatcctagtttctt |
18681457 |
T |
|
| Q |
376 |
-----nnnnnnnnnnnnngaatgatatatgttagttgttatgttannnnnnnnnnctcttttctagaacttcaactcaagacctttaactctatgaccct |
470 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18681456 |
tttttcttttttatttttgaatgatatatgttagttgttatgtta-tttttttttctcttttctagaacttcaactcaagacctttaactctatgactct |
18681358 |
T |
|
| Q |
471 |
taactaatttttgtc |
485 |
Q |
| |
|
||||||||||||||| |
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| T |
18681357 |
taactaatttttgtc |
18681343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 18682017 - 18681932
Alignment:
| Q |
1 |
atgattgaaaaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatgatgt |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18682017 |
atgattgaaaaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatgatgt |
18681932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 18677428 - 18677356
Alignment:
| Q |
10 |
aaagagttgctttggttaacaatttataaaaaggattgaaaatatgattaaaaagttgtgatgggataagatg |
82 |
Q |
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||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
18677428 |
aaagagtagttttgtttaacaatttataaaaagggttgaaaatatgattaaaaagttgtgctcggataagatg |
18677356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 18657301 - 18657218
Alignment:
| Q |
106 |
tggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaagaagttg |
189 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| ||||||| |||||||| | |||||| ||||| || ||||||||||||| |
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| T |
18657301 |
tggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
18657218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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