View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_9 (Length: 501)

Name: NF2600_low_9
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_9
NF2600_low_9
[»] chr1 (7 HSPs)
chr1 (373-493)||(23735925-23736045)
chr1 (201-364)||(23707603-23707766)
chr1 (374-493)||(23618955-23619074)
chr1 (374-493)||(23650300-23650419)
chr1 (40-175)||(23707371-23707505)
chr1 (386-488)||(23626472-23626574)
chr1 (386-488)||(23708198-23708300)
[»] chr3 (9 HSPs)
chr3 (214-355)||(54140207-54140348)
chr3 (57-174)||(54139980-54140097)
chr3 (201-295)||(52807771-52807865)
chr3 (374-493)||(52807008-52807127)
chr3 (374-434)||(54141120-54141180)
chr3 (305-364)||(52807614-52807673)
chr3 (436-493)||(52806922-52806979)
chr3 (40-83)||(1924485-1924528)
chr3 (40-111)||(52807990-52808060)
[»] chr4 (1 HSPs)
chr4 (40-175)||(48431609-48431743)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 373 - 493
Target Start/End: Complemental strand, 23736045 - 23735925
Alignment:
Q  373 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccattt 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23736045 ttgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcaatccattt 23735946  T
Q  473 gatacattagcacttcatctc 493  Q
    |||||||||||||||||||||    
T  23735945 gatacattagcacttcatctc 23735925  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 201 - 364
Target Start/End: Original strand, 23707603 - 23707766
Alignment:
Q  201 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatc 300  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  23707603 ctgcagctgtctttttaccctaaaatttgaacacagcgttactgaaattttgaagcaaattctaggagatttggaaccattaacaaacttcaactatatc 23707702  T
Q  301 accgactttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 364  Q
    ||  | |||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  23707703 actaaatttcactcatctattctatcaccgaccttgtccccatatcgtgttgcatgtttttttt 23707766  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 374 - 493
Target Start/End: Complemental strand, 23619074 - 23618955
Alignment:
Q  374 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23619074 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23618975  T
Q  474 atacattagcacttcatctc 493  Q
    |||||||||||||| |||||    
T  23618974 atacattagcactttatctc 23618955  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 374 - 493
Target Start/End: Complemental strand, 23650419 - 23650300
Alignment:
Q  374 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23650419 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatgtg 23650320  T
Q  474 atacattagcacttcatctc 493  Q
    |||||||||||||| |||||    
T  23650319 atacattagcactttatctc 23650300  T

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Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 23707371 - 23707505
Alignment:
Q  40 gaaaaataaaattcttattagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcat 139  Q
    |||| ||||||| ||||||||||||||||| ||||| |||| || |||||||||| ||| |||||||||||| ||||||||| ||||||||||||||||     
T  23707371 gaaacataaaatccttattagtttgatctggcctcttctataccccaacaatgcctaagtttactaaggtcctgtttgaaaatgccaatataaatagca- 23707469  T
Q  140 ttttcttttgacttttgcaatgccattcgtgtcatc 175  Q
    |||||||||||| ||||||||||||||| |||||||    
T  23707470 ttttcttttgacgtttgcaatgccattcctgtcatc 23707505  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 23626472 - 23626574
Alignment:
Q  386 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 485  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23626472 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23626571  T
Q  486 ttc 488  Q
    |||    
T  23626572 ttc 23626574  T

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Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 23708198 - 23708300
Alignment:
Q  386 tctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttgatacattagcac 485  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  23708198 tctagatataatgtggtgactttgtgttgactgttagacattatagcacgaacctaagaatgtagctcttgtcccttcattccatgtgatacattagtac 23708297  T
Q  486 ttc 488  Q
    |||    
T  23708298 ttc 23708300  T

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Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 54140207 - 54140348
Alignment:
Q  214 tttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaattatatcaccgactttcact 313  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||  ||||||||||    
T  54140207 tttaccctaaaatttgaacacaatgttactgaaattttgaagcaagttctagaagatttgaaaccattaacaaacctcaattctatcatggactttcact 54140306  T
Q  314 catctgttctatcaccgacctcatccccatatcgtgttgcat 355  Q
    ||| | |||||||||||||||||||||||||| |||||||||    
T  54140307 catatattctatcaccgacctcatccccatattgtgttgcat 54140348  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 54139980 - 54140097
Alignment:
Q  57 ttagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtccggtttgaaaaggccaatataaatagcatttttcttttgacttttg 156  Q
    |||||||||| || ||||| ||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  54139980 ttagtttgatttggcctcttctattccccaacaatgcccaagtttactaaggtccggtttgaaattgccaatataaatagcattcttcttttgacttttg 54140079  T
Q  157 caatgccattcgtgtcat 174  Q
    ||||||||||| ||||||    
T  54140080 caatgccattcctgtcat 54140097  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 52807865 - 52807771
Alignment:
Q  201 ctgcagctgtatttttaccctaaaatttgaacacaacgttactgaaattttgaagcaagttctaggagatttgaaaccattaacaaacttcaatt 295  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  52807865 ctgcagctgtctttttaccctaaaatttgaacacaatgtcactgaaattttgaagcaagttctaggagatttgaaatcattaacaaacctcaatt 52807771  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 374 - 493
Target Start/End: Complemental strand, 52807127 - 52807008
Alignment:
Q  374 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcacaaatctaagaatgtatctcttgtcccttcattccatttg 473  Q
    |||||||||  | ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||| ||||| | ||||||| |||||||||||| ||    
T  52807127 tgtgattttgaagctagaaacaatgtggtgactttgtgttgactgttagaaactagagcatgaatctatgaatgcagctcttgtgccttcattccatgtg 52807028  T
Q  474 atacattagcacttcatctc 493  Q
    ||||||||| | ||||||||    
T  52807027 atacattagtatttcatctc 52807008  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 54141120 - 54141180
Alignment:
Q  374 tgtgatttttgatctagatacaatgtggtgactttgtgttgactgttagacactatagcac 434  Q
    ||||||||  |||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54141120 tgtgatttgggatctagatacaatgtggtggctttgtgtcgactgttagacactagagcac 54141180  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 52807673 - 52807614
Alignment:
Q  305 actttcactcatctgttctatcaccgacctcatccccatatcgtgttgcatgtttgtttt 364  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||| |||||    
T  52807673 actttcactcatgtattctctcaccgacctcgtccccatatcgtgttgcatgttcgtttt 52807614  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 52806979 - 52806922
Alignment:
Q  436 aatctaagaatgtatctcttgtcccttcattccatttgatacattagcacttcatctc 493  Q
    |||||| ||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  52806979 aatctatgaatgtacctcttgtgccttcattccatgtgatacattagtacttcatctc 52806922  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 1924485 - 1924528
Alignment:
Q  40 gaaaaataaaattcttattagtttgatctgacctctcctattcc 83  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  1924485 gaaaaatataattcttattagtttgatctgagctcttctattcc 1924528  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 52808060 - 52807990
Alignment:
Q  40 gaaaaataaaattcttattagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtcc 111  Q
    |||||||||||| | ||||||||||||||| || || |||| || ||||||||| |||| ||||||||||||    
T  52808060 gaaaaataaaatccatattagtttgatctggccccttctatacc-caacaatgcgcaagtttactaaggtcc 52807990  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 48431743 - 48431609
Alignment:
Q  40 gaaaaataaaattcttattagtttgatctgacctctcctattcctcaacaatgcccaaggttactaaggtcc--ggtttgaaaaggccaatataaatagc 137  Q
    |||||||||||| |||||||||||||||||  ||||  ||| || |||||||||||||| ||||||||||||  |||||| ||| ||  |||||||||||    
T  48431743 gaaaaataaaatccttattagtttgatctggtctcttttatacc-caacaatgcccaagtttactaaggtccttggtttg-aaatgctgatataaatagc 48431646  T
Q  138 atttttcttttgacttttgcaatgccattcgtgtcatc 175  Q
    | ||||| |||||| ||||||||||||||| |||||||    
T  48431645 a-ttttcgtttgacgtttgcaatgccattcctgtcatc 48431609  T

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