View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2601_high_2 (Length: 331)
Name: NF2601_high_2
Description: NF2601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2601_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 7753710 - 7753416
Alignment:
| Q |
19 |
atttgacaccaacaccacactaacatacatggttacatttaattattacattttcacaaatgtagacgtgtatttctcggtgtttttgaaaaaataatga |
118 |
Q |
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| T |
7753710 |
atttgacaccaacaccagactaacatacatggttacatttaattattacattttcacaaatgtagacgtgtatttctcggtgtttttgaaaaaataatga |
7753611 |
T |
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| Q |
119 |
taaaggaggatgtgatattttactcttcgtagtttactctctttatgcttttaatgtttttcataccttccttggttggtgggaaattgggaaattaggc |
218 |
Q |
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| T |
7753610 |
taaaggaggatgtgatattttactctttgtagtttactctctttatgcttttaatgtttttcataccttccttggttggtgggaaactgggaaattaggc |
7753511 |
T |
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| Q |
219 |
caagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttgataatgatatatcacttgaagtacatgaaattaaggtat |
313 |
Q |
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| T |
7753510 |
caagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttgatactgatatatctcttgaagtacatgaaattaaggtat |
7753416 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 32929475 - 32929574
Alignment:
| Q |
214 |
taggccaagatgagaatgacagaagagtttgagacttctttgcaagtgctacgaggatttgataatgatatatcacttgaagtacatgaaattaaggtat |
313 |
Q |
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| T |
32929475 |
taggccaagatggggatgatggaggagtttgagacttcattgcaagtgttaaggggattcgacacagatatatctgttgaagtacatgaaattaaggtat |
32929574 |
T |
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