View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2601_high_3 (Length: 317)
Name: NF2601_high_3
Description: NF2601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2601_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 42091485 - 42091665
Alignment:
| Q |
18 |
gcctcaaagtccaagatgaagtgattggtcttccaatcattttttgcgtgtgttactgttagattcgtctaatgattgtgaaaagaatcaaagctaatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42091485 |
gcctcaaagtccaagatgaagtgattggtcttccaatcattttttgcgtgtgttactgttagattcgtctaatgattgtgaaaagaatcaaagctaatgg |
42091584 |
T |
|
| Q |
118 |
agaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacagtcacaatctat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42091585 |
agaaaacattggcaatgcatagcataggaatcatatgtgatatcagcaacaaaactttaaatacagacggtcacaatctat |
42091665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 42091679 - 42091738
Alignment:
| Q |
250 |
aatgtgccctattggggtatcgttaacaagtgtcaatccgtgaggcatacataatttgaga |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42091679 |
aatgtgccctattggg-tatcgttaacaagtgtcaatccgtgaggcatacataatttgaga |
42091738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University