View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2601_low_6 (Length: 248)
Name: NF2601_low_6
Description: NF2601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2601_low_6 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28503209 - 28502976
Alignment:
| Q |
1 |
tcaatattaaatagaattcgtttgatataannnnnnnngttgactctctaattcctatgagaannnnnnnnagtgtctagagttcgaatcccaaacttta |
100 |
Q |
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| T |
28503209 |
tcaatattaaatagaattcatttgatataatttttcttgttgactctctaattcctatgataattttttttagtgtttggagttcgaatcccgaacttta |
28503110 |
T |
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| Q |
101 |
cgcatattatatattgtccttaataattgagctaaattaacggagataagagaaatatattccggtaatatggagtttagcaaaattgtaagtaaaatcc |
200 |
Q |
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| T |
28503109 |
cgtatattatatattgtctttaataactgagctaaactaacggagataagagaaatatattctggtaatatggagtttagcaaaattgtaaataaagtcc |
28503010 |
T |
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| Q |
201 |
gacaaaaaattatttcaactaaaaatcaaactca |
234 |
Q |
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|| |||||||| |||||||||||||||||||||| |
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| T |
28503009 |
gataaaaaattgtttcaactaaaaatcaaactca |
28502976 |
T |
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Target: scaffold0077 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 8724 - 8682
Alignment:
| Q |
104 |
atattatatattgtccttaataattgagctaaattaacggaga |
146 |
Q |
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| T |
8724 |
atattatatattgtccttattaattgagctaagtttacggaga |
8682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 40402920 - 40402878
Alignment:
| Q |
192 |
gtaaaatccgacaaaaaattatttcaactaaaaatcaaactca |
234 |
Q |
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| T |
40402920 |
gtaaaatctgacaaaaaattatttcaactaaaatttaaactca |
40402878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 41489549 - 41489520
Alignment:
| Q |
205 |
aaaaattatttcaactaaaaatcaaactca |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41489549 |
aaaaattatttcaactaaaaatcaaactca |
41489520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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