View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_12 (Length: 451)
Name: NF2602_high_12
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 26582215 - 26581778
Alignment:
| Q |
1 |
aggctagagaaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattcctaaaaataccttttaatcgattta |
100 |
Q |
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| T |
26582215 |
aggctagataaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattcctaaaaataccttttaatcgattta |
26582116 |
T |
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| Q |
101 |
ggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttgaaaatacaatcacannnnnnnnn----ccttttggaa |
196 |
Q |
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| T |
26582115 |
ggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttggaaatacaatcacatttttttttttttccttttggaa |
26582016 |
T |
|
| Q |
197 |
aaattaaatattatcaactgcatttctttttacctatatatgagactagaggagtagcttgtgattttacaatggtaagtgagaagattaataagcaacc |
296 |
Q |
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| T |
26582015 |
aaattaaatattatcaactgcatttctttttacctatatatgagactagagaagtagcttgtgaatttacaatggtaagtgagaagattaacaagcaacc |
26581916 |
T |
|
| Q |
297 |
ccatgaatcatagagaagtaagcaacatataaaaaatatatgctacatgttttctggtctcttggactatagataagaataatgttcaaattttatgttg |
396 |
Q |
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| T |
26581915 |
ccatgaatcatagagaagtaagcaacatataaaaaatatatgctacatgttttctggtctcttggactatagataagaataatgttcaaattttatgttg |
26581816 |
T |
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| Q |
397 |
catacttaccagcatcctgtttgtgatgtgtatacctt |
434 |
Q |
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| T |
26581815 |
catacttaccagcatcctgtttgtgatgtgtatacctt |
26581778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 26581083 - 26581048
Alignment:
| Q |
369 |
ataagaataatgttcaaattttatgttgcatactta |
404 |
Q |
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| T |
26581083 |
ataagaataatgttcaatttttatgttgcatactta |
26581048 |
T |
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