View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_15 (Length: 411)
Name: NF2602_high_15
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 402
Target Start/End: Complemental strand, 29517438 - 29517068
Alignment:
| Q |
21 |
tattgaaatatcaaatttgatcaagtacaaattcaattaatgattcgtgcgtcaacattgtagatctgaaagtatgataatttgatcaatannnnnnnnn |
120 |
Q |
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| T |
29517438 |
tattgaaatatcaaatttgattaagtacatattcaattaatgatttgtgcgtcaacattgtagatttgaaagtatgattatttgatcaatatttttt--- |
29517342 |
T |
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| Q |
121 |
gtttaaaagagaacaaaagcccaatattttaataattttagtgttgtatattattaacttgagtattgtgagttttttgcagattaatatttagatcaat |
220 |
Q |
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| T |
29517341 |
gtttaaaagagtacaaaaacccaatattttaataatttta----------ttattaacttgagtattgtgagttttttgcagattaatatttagatcaat |
29517252 |
T |
|
| Q |
221 |
ttgattgaataagtgtgtgt--atgaagcctcgtgtgaatttattttacttttaagttattttgtataaaaattgaattaagagaagnnnnnnnnnttct |
318 |
Q |
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| T |
29517251 |
ttgattgaataagtgtgtgtgtatgaagcctcgtgtgaatttattttacttttaagttattttgtataaaaattgaattaagagaaagaaaaaaaaatct |
29517152 |
T |
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| Q |
319 |
attttactttttatacaccccctaaaactatcatattttcaacttctagctttccctctcccactcttctctaatctctcctat |
402 |
Q |
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| T |
29517151 |
attttactttttatacaccccctaaaactatcatattttcaacttctagctttccctctcacactcttctctaatctctcctat |
29517068 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 27498378 - 27498337
Alignment:
| Q |
44 |
agtacaaattcaattaatgattcgtgcgtcaacattgtagat |
85 |
Q |
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| T |
27498378 |
agtacaaattcaattaatgatttgggcgtcaacattgcagat |
27498337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 45789595 - 45789660
Alignment:
| Q |
21 |
tattgaaatatcaaatttgatcaagtacaaattcaattaatgattcgtgcgtcaacattgtagatc |
86 |
Q |
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|||||||||||||| ||| ||||| |||| ||||||| ||||||| | ||||| || ||||||||| |
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| T |
45789595 |
tattgaaatatcaactttaatcaattacagattcaatcaatgatttgggcgtcgacgttgtagatc |
45789660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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