View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2602_high_16 (Length: 407)

Name: NF2602_high_16
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2602_high_16
NF2602_high_16
[»] chr7 (9 HSPs)
chr7 (40-388)||(45629757-45630105)
chr7 (44-280)||(30784891-30785128)
chr7 (313-387)||(42311093-42311168)
chr7 (313-387)||(46821827-46821902)
chr7 (313-372)||(2843416-2843476)
chr7 (313-387)||(12539144-12539219)
chr7 (313-387)||(23085335-23085408)
chr7 (277-310)||(7907587-7907620)
chr7 (313-372)||(20116411-20116471)
[»] chr4 (8 HSPs)
chr4 (134-281)||(17056427-17056575)
chr4 (313-372)||(44947243-44947303)
chr4 (313-387)||(10389942-10390017)
chr4 (313-372)||(21089992-21090053)
chr4 (313-373)||(2115777-2115838)
chr4 (313-385)||(50179598-50179671)
chr4 (313-372)||(1531746-1531806)
chr4 (313-372)||(9283751-9283811)
[»] chr2 (6 HSPs)
chr2 (313-387)||(9986536-9986611)
chr2 (313-387)||(27249340-27249415)
chr2 (315-387)||(6173449-6173522)
chr2 (313-385)||(33229177-33229250)
chr2 (316-387)||(41712957-41713029)
chr2 (313-369)||(45128040-45128096)
[»] chr6 (5 HSPs)
chr6 (313-387)||(23947506-23947581)
chr6 (313-387)||(25064048-25064123)
chr6 (313-372)||(12652768-12652828)
chr6 (318-387)||(8196601-8196671)
chr6 (313-372)||(8496793-8496853)
[»] chr1 (5 HSPs)
chr1 (313-372)||(19723166-19723225)
chr1 (313-387)||(40646505-40646580)
chr1 (313-387)||(50166288-50166362)
chr1 (313-372)||(50148204-50148264)
chr1 (313-369)||(51871700-51871756)
[»] scaffold0003 (1 HSPs)
scaffold0003 (313-386)||(361983-362057)
[»] chr3 (8 HSPs)
chr3 (314-387)||(38855226-38855300)
chr3 (313-372)||(44907588-44907648)
chr3 (277-310)||(24355450-24355483)
chr3 (313-387)||(32607278-32607354)
chr3 (313-373)||(39917585-39917646)
chr3 (313-372)||(4178390-4178450)
chr3 (313-372)||(25162262-25162322)
chr3 (313-372)||(25631716-25631776)
[»] chr8 (9 HSPs)
chr8 (313-372)||(9498790-9498850)
chr8 (313-387)||(9619547-9619622)
chr8 (312-387)||(32724677-32724754)
chr8 (313-381)||(17949073-17949142)
chr8 (277-310)||(38869904-38869937)
chr8 (315-387)||(44100123-44100196)
chr8 (313-372)||(11725517-11725577)
chr8 (313-369)||(33895920-33895976)
chr8 (276-304)||(37147803-37147831)
[»] chr5 (2 HSPs)
chr5 (313-372)||(42579708-42579768)
chr5 (313-372)||(30371555-30371615)
[»] scaffold0608 (1 HSPs)
scaffold0608 (313-385)||(57-130)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 40 - 388
Target Start/End: Original strand, 45629757 - 45630105
Alignment:
Q  40 atgcgatcttataacatttgattcttttttgaaattgccttaaaataattcaaataaaactggaatgttaaacttatttgaaatatatctaaaataatat 139  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45629757 atgcgatcttataacattttattctttttttaaattgccttaaaataattcaaataaaaatggaatgttaaacttatttgaaatatatctaaaataatat 45629856  T
Q  140 gattttatttagtttctaatattgaatttgtcccaaatttgtctcaaactagtattaacatgcttctttgattctatatgaaatatgtctagnnnnnnnn 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  45629857 gattttatttagtttctaatattgaatttgtcccaaatttgtctcaaactagtattaacatgcttctttgattctatatgaaatatgtctagaaaaaaaa 45629956  T
Q  240 nggaaggaaacttggtaaatatgaaaatacctttttctaacatgtgccttaagggcacaagataacatgacttttgacccaaaaccaccctcaatgaata 339  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  45629957 aggaaggaaacttggtaaatatgaaaatacctttttctaatatgtgccctaagggtacaagataacatgacttttgatccaaaaccaccctcaatgaata 45630056  T
Q  340 aactttaggagaaaacgtagagagagaaaactaatgtcggcttgttggg 388  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  45630057 aactctaggagaaaacgtagagagagaaaactagtgtcggtttgttggg 45630105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 30784891 - 30785128
Alignment:
Q  44 gatcttataacatttgattcttttttgaaattgccttaaaataattcaaataaaactggaatgttaaacttatttgaaatatatctaaaataatatgatt 143  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30784891 gatcttataacatttgattctttttttaaattgccttaatataattcaaataaaactggaatgttaaacttatttgaaatatatctaaaataatatgatt 30784990  T
Q  144 ttatttagtttctaatattgaatttgtcccaaatttgtctcaaactagtattaacatgcttctttgattctatatgaaatatgtctag-nnnnnnnnngg 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  30784991 ttatttagtttttaatattgaatttgtcccaaatttgtctcaaactagtattaacatgcttctttgattctatatgaaatatgtctagaaaaaaaaaagg 30785090  T
Q  243 aaggaaacttggtaaatatgaaaatacctttttctaac 280  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30785091 aaggaaacttggtaaatatgaaaatacctttttgtaac 30785128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 42311168 - 42311093
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| ||| |||| ||||| || |||||||| ||||||||||||| ||  |||||||||||||    
T  42311168 ttgacccaaaaccacccctcagtgaagaaactctaagagaaaacctagagagagaaaattagggtcggcttgttgg 42311093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 46821902 - 46821827
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||| | || |||||||| ||||||||||||||||  | |||||||||||    
T  46821902 ttgacccaaaaccacccctcaatgaaaaaattataagagaaaacctagagagagaaaactagggccggcttgttgg 46821827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 2843416 - 2843476
Alignment:
Q  313 ttgacccaaaaccaccct-caatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    |||||||||||||||||| ||||||| ||| | || |||||||| ||||||||||||||||    
T  2843416 ttgacccaaaaccacccttcaatgaagaaattgtaagagaaaacctagagagagaaaacta 2843476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 12539144 - 12539219
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||||| |||||||||| |||||||| |||||  | |||||||  ||||||||||||||||  |||||||||||||    
T  12539144 ttgaccaaaaaccacccctcaatgaagaaactggaagagaaaatctagagagagaaaactagggtcggcttgttgg 12539219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 23085408 - 23085335
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| ||||||| ||||   || ||||||| ||||||||||||| ||  |||||||||||||    
T  23085408 ttgacccaaaaccacccccaatgaagaaacggaag-agaaaacctagagagagaaaattagggtcggcttgttgg 23085335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 7907587 - 7907620
Alignment:
Q  277 taacatgtgccttaagggcacaagataacatgac 310  Q
    |||||||||||||||||||||||| |||||||||    
T  7907587 taacatgtgccttaagggcacaagttaacatgac 7907620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 20116471 - 20116411
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    |||||||||||| |||| ||| |||| |||||| | |||||||| ||||||||||||||||    
T  20116471 ttgacccaaaactacccctcattgaagaaacttgaagagaaaacatagagagagaaaacta 20116411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 134 - 281
Target Start/End: Complemental strand, 17056575 - 17056427
Alignment:
Q  134 taatatgattttatttagtttctaatattgaatttgtcccaaatttgtctcaaactagtattaacatgcttctttgattctatatgaaatatgtctag-n 232  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||      
T  17056575 taatatgattttatttagtttttaatattgaatttgtcccaaatttgtctcaaactagtaataacatgcttcttttattctatatgaaatatgtctagaa 17056476  T
Q  233 nnnnnnnnggaaggaaacttggtaaatatgaaaatacctttttctaaca 281  Q
            ||||||||||||||||||||||||||||||| |||||||||    
T  17056475 aaaaaaaaggaaggaaacttggtaaatatgaaaatacctctttctaaca 17056427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 44947303 - 44947243
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||||    
T  44947303 ttgacccaaaaccacccctcaatgaagaaactgtaagagaaaacttagagagagaaaacta 44947243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 10389942 - 10390017
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| |||| |||||||||||  | |||||||||||    
T  10389942 ttgacccaaaaccacccctcaatgaagaaactataagagaaaacctagaaagagaaaactagggccggcttgttgg 10390017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 21090053 - 21089992
Alignment:
Q  313 ttgacccaaaaccaccc--tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    |||||||||||||||||  |||||||| |||||  | |||||||| ||||||||||||||||    
T  21090053 ttgacccaaaaccaccccctcaatgaagaaactagaagagaaaacctagagagagaaaacta 21089992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 2115777 - 2115838
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaa 373  Q
    ||||||||||||||||| |||||||||||| | || || ||||  |||||||||||||||||    
T  2115777 ttgacccaaaaccacccctcaatgaataaattgtaagaaaaaatctagagagagaaaactaa 2115838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 50179671 - 50179598
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgtt 385  Q
    ||||||||||||||||| |||||| | ||||| || |||||||  ||||||||||||||||  |||| ||||||    
T  50179671 ttgacccaaaaccacccctcaatggagaaactgtaagagaaaagctagagagagaaaactatggtcgacttgtt 50179598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 1531806 - 1531746
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||| ||||||| |||||||| ||||| || |||||||| |||| |||||||||||    
T  1531806 ttgacccaataccacccctcaatgaagaaactgtaagagaaaacctagaaagagaaaacta 1531746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 9283811 - 9283751
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||| | || |||| ||| ||||||||||||||||    
T  9283811 ttgacccaaaaccacccctcaatgaagaaattgtaagagataacctagagagagaaaacta 9283751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 9986536 - 9986611
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||||  |||||||| ||||    
T  9986536 ttgacccaaaaccacccctcaatgaagaaactgtaagagaaaacctagagagagaaaactagggtcggcttattgg 9986611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 27249340 - 27249415
Alignment:
Q  313 ttgacccaaaaccaccct-caatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||||||||||||||||| ||||||| ||| | || |||||||| |||||||||||||||||   |||||||||||    
T  27249340 ttgacccaaaaccacccttcaatgaagaaattgtaagagaaaacctagagagagaaaactaaaaccggcttgttgg 27249415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 6173522 - 6173449
Alignment:
Q  315 gacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||| |||||||||| |||||||| ||||  ||  ||||||| ||||||||||||||||  |||||||||||||    
T  6173522 gaccgaaaaccacccctcaatgaagaaaccgtaaaagaaaacctagagagagaaaactagggtcggcttgttgg 6173449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 33229177 - 33229250
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgtt 385  Q
    ||||||||||||||||| |||||||| ||||  || |||||||| ||||||||| ||||||  | |||||||||    
T  33229177 ttgacccaaaaccacccttcaatgaagaaacagtaagagaaaacctagagagaggaaactagggccggcttgtt 33229250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 41712957 - 41713029
Alignment:
Q  316 acccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||||||||||||| |||||||| ||| | || |||||||| |||| |||||||||||  |||||||| ||||    
T  41712957 acccaaaaccacccctcaatgaagaaattgtaagagaaaacctagatagagaaaactagggtcggcttattgg 41713029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 45128096 - 45128040
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaa 369  Q
    ||||||||||||||||||||||||| |||    | |||||||| |||||||||||||    
T  45128096 ttgacccaaaaccaccctcaatgaagaaatgggaagagaaaacctagagagagaaaa 45128040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 23947506 - 23947581
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| |||||  | || ||||| ||||||||||||||||  |||||||||||||    
T  23947506 ttgacccaaaaccacccctcaatgaagaaactagaagaaaaaacctagagagagaaaactagggtcggcttgttgg 23947581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 25064123 - 25064048
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||| | || |||||||| ||||||||||||||||  | |||||||||||    
T  25064123 ttgacccaaaaccacccctcaatgaagaaattgtaagagaaaacctagagagagaaaactagggccggcttgttgg 25064048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 12652828 - 12652768
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||||| |  |||||||| ||||||||||||||||    
T  12652828 ttgacccaaaaccacccctcaatgaagaaactgtgagagaaaacctagagagagaaaacta 12652768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 8196601 - 8196671
Alignment:
Q  318 ccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagaga-aaactaatgtcggcttgttgg 387  Q
    |||||||||||||||||||| ||||| ||  ||||||  |||||||||| ||||||| | |||||||||||    
T  8196601 ccaaaaccaccctcaatgaagaaactgtaccagaaaatctagagagagagaaactaaggccggcttgttgg 8196671  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 8496853 - 8496793
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||| ||||||||||| |||||||| ||| | || |||||||| ||||||||||||||||    
T  8496853 ttgactcaaaaccacccctcaatgaagaaattgtaagagaaaacctagagagagaaaacta 8496793  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 19723225 - 19723166
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||||||||||| ||||| || |||||||| |||||| | |||||||    
T  19723225 ttgacccaaaaccaccctcaatgaagaaactataagagaaaacctagagaaaaaaaacta 19723166  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 40646580 - 40646505
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||| | || |||||||| ||||||||||||||||  | |||||||||||    
T  40646580 ttgacccaaaaccacccctcaatgaagaaattgtaagagaaaacctagagagagaaaactagggccggcttgttgg 40646505  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 50166288 - 50166362
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| ||||||| ||||   | |||||||| ||||||||||||| ||  | |||||||||||    
T  50166288 ttgacccaaaaccacccccaatgaagaaacgggaagagaaaacctagagagagaaaattatgggcggcttgttgg 50166362  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 50148264 - 50148204
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||| | || |||||||  ||||||||||||||||    
T  50148264 ttgacccaaaaccacccctcaatgaagaaattataagagaaaatctagagagagaaaacta 50148204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 51871756 - 51871700
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaa 369  Q
    ||||||||||||||||| ||||||| ||||   | |||||||| |||||||||||||    
T  51871756 ttgacccaaaaccacccccaatgaagaaacgagaagagaaaacctagagagagaaaa 51871700  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 361983 - 362057
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttg 386  Q
    ||||| ||||||||||| |||||||| ||||| || |||||||| || |||||||||||||| | ||||||||||    
T  361983 ttgactcaaaaccacccctcaatgaagaaactgtaagagaaaacctaaagagagaaaactaaggccggcttgttg 362057  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 38855226 - 38855300
Alignment:
Q  314 tgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||||||||||||||| |||||||| |||   || |||||||| ||||||||||||||||  |||||||||||||    
T  38855226 tgacccaaaaccacccctcaatgaagaaatagtaagagaaaacctagagagagaaaactagggtcggcttgttgg 38855300  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 44907588 - 44907648
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||| ||| ||| | ||||||||||| ||||||||||||||||    
T  44907588 ttgacccaaaaccacccctcaaagaagaaattgtaggagaaaacctagagagagaaaacta 44907648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 24355483 - 24355450
Alignment:
Q  277 taacatgtgccttaagggcacaagataacatgac 310  Q
    |||||||||||||||||||||||| |||||||||    
T  24355483 taacatgtgccttaagggcacaagttaacatgac 24355450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 32607354 - 32607278
Alignment:
Q  313 ttgacccaaaaccaccc--tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    |||||||||||||||||  |||||||| ||| | || |||||||  ||||||||||||||||  | |||||||||||    
T  32607354 ttgacccaaaaccaccccctcaatgaagaaattgtaagagaaaatctagagagagaaaactagggccggcttgttgg 32607278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 39917585 - 39917646
Alignment:
Q  313 ttgacccaaaaccac-cctcaatgaataaactttaggagaaaacgtagagagagaaaactaa 373  Q
    ||||||||||||||| ||||| |||| ||||| || | |||||| |||||||||||||||||    
T  39917585 ttgacccaaaaccactcctcagtgaagaaactgtaagggaaaacctagagagagaaaactaa 39917646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 4178450 - 4178390
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||||  || || ||||| ||||||||||||||||    
T  4178450 ttgacccaaaaccacccctcaatgaagaaacagtaagaaaaaacctagagagagaaaacta 4178390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 25162322 - 25162262
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||| ||||||||||| ||| |||| ||||| || |||||||| ||||||||||||||||    
T  25162322 ttgacacaaaaccacccctcagtgaagaaactgtaagagaaaacctagagagagaaaacta 25162262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 25631716 - 25631776
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| |||   || |||||||| ||||||||||||||||    
T  25631716 ttgacccaaaaccacccctcaatgaagaaatagtaagagaaaacctagagagagaaaacta 25631776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 9498790 - 9498850
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||| | || |||||||| ||||||||||||||||    
T  9498790 ttgacccaaaaccacccctcaatgaagaaattgtaagagaaaacctagagagagaaaacta 9498850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 9619547 - 9619622
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||| |||||||| ||| | || |||||||  ||||||||||||||||  | |||||||||||    
T  9619547 ttgacccaaaaccacccctcaatgaagaaattgtaagagaaaatctagagagagaaaactagagccggcttgttgg 9619622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 387
Target Start/End: Original strand, 32724677 - 32724754
Alignment:
Q  312 tttgacccaaaaccaccc--tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||||||  |||||| | ||||| || ||||||||  |||||||||||||||  |||| ||||||||    
T  32724677 tttgacccaaaaccaccccctcaatggagaaactgtaagagaaaacccagagagagaaaactagggtcgacttgttgg 32724754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 17949142 - 17949073
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggct 381  Q
    ||||||||||| ||||| |||||||| ||||| || |||| ||| ||||||||||||||||  |||||||    
T  17949142 ttgacccaaaatcacccatcaatgaagaaactgtaagagacaacctagagagagaaaactatggtcggct 17949073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 38869904 - 38869937
Alignment:
Q  277 taacatgtgccttaagggcacaagataacatgac 310  Q
    |||||||||||||||||||||||| |||||||||    
T  38869904 taacatgtgccttaagggcacaagttaacatgac 38869937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 44100123 - 44100196
Alignment:
Q  315 gacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgttgg 387  Q
    ||||||||||||||| |||||||| ||||   | |||||||| ||||||||||||||||  | |||||||||||    
T  44100123 gacccaaaaccacccctcaatgaagaaaccgaaagagaaaacctagagagagaaaactagggccggcttgttgg 44100196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 11725577 - 11725517
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| |||||  | |||||||  ||||||||||||||||    
T  11725577 ttgacccaaaaccacccctcaatgaagaaactgaaagagaaaatctagagagagaaaacta 11725517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 33895976 - 33895920
Alignment:
Q  313 ttgacccaaaaccaccctcaatgaataaactttaggagaaaacgtagagagagaaaa 369  Q
    ||||||||||||||||| ||||||| ||||   | |||||||| |||||||||||||    
T  33895976 ttgacccaaaaccacccccaatgaagaaacgcgaagagaaaacctagagagagaaaa 33895920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 37147803 - 37147831
Alignment:
Q  276 ctaacatgtgccttaagggcacaagataa 304  Q
    |||||||||||||||||||||||||||||    
T  37147803 ctaacatgtgccttaagggcacaagataa 37147831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 42579768 - 42579708
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||| | ||||| || |||||||| ||||||||||||||||    
T  42579768 ttgacccaaaaccacccctcaatggagaaactgtaagagaaaacctagagagagaaaacta 42579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 30371615 - 30371555
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaacta 372  Q
    ||||||||||||||||| |||||||| ||| | || |||||||| |||| |||||||||||    
T  30371615 ttgacccaaaaccacccctcaatgaagaaattgtaagagaaaacctagatagagaaaacta 30371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 130 - 57
Alignment:
Q  313 ttgacccaaaaccaccc-tcaatgaataaactttaggagaaaacgtagagagagaaaactaatgtcggcttgtt 385  Q
    ||||||||||||||||| |||||| | ||||| || |||||||  ||||||||||||||||  |||| ||||||    
T  130 ttgacccaaaaccacccctcaatggagaaactgtaagagaaaagctagagagagaaaactatggtcgacttgtt 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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