View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_32 (Length: 296)
Name: NF2602_high_32
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 175 - 290
Target Start/End: Original strand, 5921912 - 5922027
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5921912 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
5922011 |
T |
|
| Q |
275 |
atattaattctcctat |
290 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5922012 |
atattaattctcctat |
5922027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 5921757 - 5921863
Alignment:
| Q |
20 |
aacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921757 |
aacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
5921856 |
T |
|
| Q |
120 |
tcaggga |
126 |
Q |
| |
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||||||| |
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| T |
5921857 |
tcaggga |
5921863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 3020194 - 3020079
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3020194 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatactttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
3020095 |
T |
|
| Q |
275 |
atattaattctcctat |
290 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3020094 |
atattaattctcctat |
3020079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 3015992 - 3015886
Alignment:
| Q |
20 |
aacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3015992 |
aacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaagcgagtgcattcatgcactatgctacaa |
3015893 |
T |
|
| Q |
120 |
tcaggga |
126 |
Q |
| |
|
||||||| |
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|
| T |
3015892 |
tcaggga |
3015886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 3020349 - 3020247
Alignment:
| Q |
20 |
aacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3020349 |
aacagtggtttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
3020250 |
T |
|
| Q |
120 |
tca |
122 |
Q |
| |
|
||| |
|
|
| T |
3020249 |
tca |
3020247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 3015837 - 3015733
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3015837 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctcctcattaattctttattatttc |
3015738 |
T |
|
| Q |
275 |
atatt |
279 |
Q |
| |
|
||||| |
|
|
| T |
3015737 |
atatt |
3015733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 42832635 - 42832733
Alignment:
| Q |
28 |
tttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaatcaggga |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42832635 |
tttatattatttttaaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctaaaatcaggga |
42832733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 42832781 - 42832889
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42832781 |
tgatttgttttgttgtc-----gacttttgagctgtaacagttccatgctttaatttgttgtggtatgacttttgctcctcattaattctttattatttc |
42832875 |
T |
|
| Q |
275 |
atattaattctcct |
288 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42832876 |
atattaattctcct |
42832889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 2663127 - 2663012
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
2663127 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctactcattaattctttattatttc |
2663028 |
T |
|
| Q |
275 |
atattaattctcctat |
290 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2663027 |
atattaattctcctat |
2663012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 2658740 - 2658629
Alignment:
| Q |
175 |
tgatttgttttgttgtctcattgacttttgagctgtaacagtttcatgctttgatttgttgtggtatgacttttgctcctcgttaattctttattatttc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
2658740 |
tgatttgttttgttgtctcattgacttttgagctgtaacagttccatgctttgatttgttgtggtatgacttttgctactcattaattctttattatttc |
2658641 |
T |
|
| Q |
275 |
atattaattctc |
286 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2658640 |
atattaattctc |
2658629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 2663282 - 2663176
Alignment:
| Q |
20 |
aacagtgatttatattatttttgaatgaattacaattgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2663282 |
aacagtggtttatattatttttgaatgaattacaaatgtgagaataatctctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaa |
2663183 |
T |
|
| Q |
120 |
tcaggga |
126 |
Q |
| |
|
| ||||| |
|
|
| T |
2663182 |
taaggga |
2663176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 2658846 - 2658792
Alignment:
| Q |
69 |
tctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaatcag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2658846 |
tctattaatagatagagagtgaaccgagtgcattcatgcactatgctacaatcag |
2658792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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