View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_38 (Length: 254)
Name: NF2602_high_38
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 35042665 - 35042898
Alignment:
| Q |
9 |
aatgaattgttagcacaaaaagaattcaaacttaaagacctaaaaagaagcacatttgtttgtctcaagctta---tactaccaggtcaaccccgtaagt |
105 |
Q |
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| T |
35042665 |
aatgaattgttagcacaaaaagaattcaaacttaa-gatctaaaaagaagtacactcgtgtgtctcaagcttacactactactaggtcaacct-gtaagt |
35042762 |
T |
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| Q |
106 |
caatgagatacttttctcttaatttt-taacaaaatgcattagaatttttatgccaacaataagggaagaaagaatggagacaagaggggtcactctcca |
204 |
Q |
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|||||||||| || ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042763 |
caatgagatagttatctcttatttttttaacaaaatgcattataatttttatgccaacaataagggaagaaagaatggagacaagaggggtcactctcca |
35042862 |
T |
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| Q |
205 |
tggtcactgatttcaaaggaaaccattgtccctatg |
240 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
35042863 |
tggtcactgatttcaaaggaaaccattgtccttatg |
35042898 |
T |
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