View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2602_high_39 (Length: 250)

Name: NF2602_high_39
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2602_high_39
NF2602_high_39
[»] chr4 (3 HSPs)
chr4 (13-250)||(44187283-44187507)
chr4 (77-250)||(1328563-1328730)
chr4 (143-204)||(27983423-27983484)
[»] chr7 (2 HSPs)
chr7 (143-204)||(12966246-12966307)
chr7 (145-207)||(36869225-36869287)
[»] chr3 (3 HSPs)
chr3 (143-206)||(7895869-7895932)
chr3 (143-205)||(35481158-35481220)
chr3 (143-208)||(12096692-12096757)
[»] chr6 (1 HSPs)
chr6 (151-209)||(579656-579714)
[»] chr1 (1 HSPs)
chr1 (143-193)||(3777262-3777312)
[»] chr8 (1 HSPs)
chr8 (143-204)||(7531635-7531696)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 44187507 - 44187283
Alignment:
Q  13 aatatgtttatgtaaaaattgttgcaagcgaatacaattataccacnnnnnnncttaaatgtataacagttcaacaaagatgccaacactatggccatag 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||             |||||||||||||    
T  44187507 aatatgtttatgtaaaaattgttgcaagtgaatacaattataccactttttttcttaaatgtataacagttcaa-------------actatggccatag 44187421  T
Q  113 aaaaatgtgttataattatgacggtaattttttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgtattcttca 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44187420 aaaagtgtgttataattatgacggtaattttttgattcatgtagccgattccaattaataggattatgcttggttgttgttattgttgttgtattcttca 44187321  T
Q  213 ccaagacttagagaggcaaagacaatataaataggaaa 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44187320 ccaagacttagagaggcaaagacaatataaataggaaa 44187283  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 250
Target Start/End: Complemental strand, 1328730 - 1328563
Alignment:
Q  77 aacagttcaacaaagatgccaacactatggccataga-aaaatgtgttataattatgacggtaattttttgattcatgtagccgatcccaattaataggg 175  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||   |||||| |||||| ||||||| |  || | ||     
T  1328730 aacagttcaacaaagatgccaacactatggccatagaaaaaatgtgttataattatggtggtaa---tttgatccatgtatccgatcctacctagtggga 1328634  T
Q  176 ttatgcttggttgttgttattgttgttgtattcttcaccaagacttagagaggcaaagacaatataaataggaaa 250  Q
    | | ||||||||||||   |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  1328633 taaggcttggttgttg---ttgttgttgtattcttcaccgagacttagagagg-aaaaacaatataaataggaaa 1328563  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 27983423 - 27983484
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgt 204  Q
    |||||| |||||||||||||||||||||| || | | | |||||||||||| || |||||||    
T  27983423 tttgatccatgtagccgatcccaattaatgggataaggtttggttgttgttgtttttgttgt 27983484  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 12966246 - 12966307
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgt 204  Q
    ||||||||||||||||||||||| ||| | || | | |||||||||||||| ||||||||||    
T  12966246 tttgattcatgtagccgatcccacttagtgggataaggcttggttgttgttgttgttgttgt 12966307  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 36869287 - 36869225
Alignment:
Q  145 tgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgtatt 207  Q
    |||| ||||||||||| |||| ||||| || | | |||||||||||||| |||||||||||||    
T  36869287 tgatccatgtagccgaccccacttaatgggataaggcttggttgttgttgttgttgttgtatt 36869225  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 7895932 - 7895869
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgtat 206  Q
    |||||| ||||||||||| |||| ||||| || | | |||||||||||||| ||||||||||||    
T  7895932 tttgatccatgtagccgaccccacttaatgggataaggcttggttgttgttgttgttgttgtat 7895869  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 35481158 - 35481220
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgta 205  Q
    |||||||||| ||||||| |||| ||||| || | | ||||||||||||||||||||| ||||    
T  35481158 tttgattcatttagccgaccccacttaatgggataaggcttggttgttgttattgttgctgta 35481220  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 12096757 - 12096692
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgtattc 208  Q
    |||||| ||||||||||| |||| ||| | || | | |||||||||||||| ||||||||||||||    
T  12096757 tttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttgttgttgtattc 12096692  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 579656 - 579714
Alignment:
Q  151 atgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgtattct 209  Q
    ||||||||||||||| ||| | || | | |||||||||||||| |||||||||||||||    
T  579656 atgtagccgatcccacttagtgggataaagcttggttgttgttgttgttgttgtattct 579714  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 3777312 - 3777262
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgtt 193  Q
    |||||| |||||||||||||||| ||| |||| | ||||||||||||||||    
T  3777312 tttgatccatgtagccgatcccacttagtaggataatgcttggttgttgtt 3777262  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7531696 - 7531635
Alignment:
Q  143 tttgattcatgtagccgatcccaattaatagggttatgcttggttgttgttattgttgttgt 204  Q
    |||||||||||||||||| | || ||| |||| | | |||||||||||||| ||||||||||    
T  7531696 tttgattcatgtagccgaactcacttagtaggataaggcttggttgttgttcttgttgttgt 7531635  T

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