View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_43 (Length: 244)
Name: NF2602_high_43
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 40425098 - 40424873
Alignment:
| Q |
18 |
gtcattggatcatgagtataccaattgcaatttaatatagaaatcctcctaatcctaatcctaactctggatattgtcattggatcatgagtactatttt |
117 |
Q |
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| T |
40425098 |
gtcattggatcatgagtatacctattgcaatttaatatagaaatcctcctaatcctaatcctaactctggatattgtcattggatcatgag-actatttt |
40425000 |
T |
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| Q |
118 |
tagtatgactagtacacacgtatatagttttttccattcagagcaaagttaattaatattatactgctaaacacatatatgcttaaaatcatttttatat |
217 |
Q |
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| T |
40424999 |
tagtatgactagtacacacgtatatagttttttccattccgagcaaagttaattaatattatactgctaaacacatatatgcttaaaatcatttttatat |
40424900 |
T |
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| Q |
218 |
tattctaattatttattaaactctttt |
244 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
40424899 |
tattctaattatttattaaattctttt |
40424873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 40440385 - 40440311
Alignment:
| Q |
34 |
tataccaattgcaatttaatatagaaatcctcctaatcctaatcctaactctggatattgtcattggatcatgag |
108 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
40440385 |
tatacctattgcaatttaatataggggacctcctaatcctaatcctaactctagatatggtcattcgatcatgag |
40440311 |
T |
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