View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2602_high_47 (Length: 228)

Name: NF2602_high_47
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2602_high_47
NF2602_high_47
[»] chr4 (13 HSPs)
chr4 (12-228)||(40424462-40424678)
chr4 (82-163)||(28236384-28236465)
chr4 (100-166)||(56375510-56375576)
chr4 (79-155)||(39708632-39708708)
chr4 (79-163)||(55007945-55008029)
chr4 (79-157)||(46226373-46226451)
chr4 (83-163)||(35690474-35690554)
chr4 (81-157)||(45184138-45184214)
chr4 (79-153)||(22873608-22873682)
chr4 (81-163)||(51421931-51422013)
chr4 (79-163)||(25575023-25575107)
chr4 (79-163)||(37798050-37798134)
chr4 (79-163)||(51438644-51438728)
[»] chr8 (17 HSPs)
chr8 (79-163)||(35323972-35324056)
chr8 (79-163)||(42584558-42584641)
chr8 (79-162)||(4955390-4955473)
chr8 (100-163)||(32569709-32569772)
chr8 (79-168)||(15215406-15215495)
chr8 (79-163)||(490534-490618)
chr8 (88-156)||(18741840-18741908)
chr8 (88-156)||(18746804-18746872)
chr8 (79-163)||(30198265-30198349)
chr8 (79-163)||(33076323-33076407)
chr8 (79-162)||(29520848-29520931)
chr8 (83-166)||(30783038-30783121)
chr8 (79-162)||(35914601-35914684)
chr8 (106-162)||(26363712-26363768)
chr8 (85-149)||(34692605-34692669)
chr8 (85-121)||(37768484-37768520)
chr8 (109-157)||(39702183-39702231)
[»] chr1 (11 HSPs)
chr1 (79-163)||(34444555-34444639)
chr1 (79-162)||(25715326-25715409)
chr1 (79-163)||(8796408-8796492)
chr1 (79-163)||(28090693-28090777)
chr1 (79-157)||(37462881-37462959)
chr1 (79-134)||(39896762-39896817)
chr1 (100-162)||(28533687-28533749)
chr1 (79-163)||(6084174-6084258)
chr1 (79-163)||(25979230-25979314)
chr1 (79-163)||(38807670-38807754)
chr1 (79-163)||(51812708-51812792)
[»] chr7 (14 HSPs)
chr7 (79-163)||(36101776-36101860)
chr7 (99-163)||(5418293-5418357)
chr7 (79-163)||(25891087-25891171)
chr7 (105-163)||(17907723-17907781)
chr7 (79-163)||(25731473-25731557)
chr7 (79-162)||(40979928-40980011)
chr7 (79-157)||(31681025-31681103)
chr7 (84-157)||(9796288-9796361)
chr7 (79-163)||(28355364-28355449)
chr7 (79-163)||(2885721-2885805)
chr7 (79-163)||(7273299-7273383)
chr7 (79-163)||(9210703-9210787)
chr7 (79-123)||(26332912-26332956)
chr7 (79-163)||(28208327-28208411)
[»] chr6 (8 HSPs)
chr6 (100-162)||(1615223-1615285)
chr6 (79-163)||(34504-34588)
chr6 (79-157)||(30031455-30031533)
chr6 (79-144)||(7513008-7513073)
chr6 (79-163)||(12890774-12890858)
chr6 (79-162)||(5096033-5096116)
chr6 (79-157)||(608360-608438)
chr6 (79-163)||(3206458-3206542)
[»] chr5 (7 HSPs)
chr5 (79-163)||(11675729-11675813)
chr5 (79-165)||(18855806-18855892)
chr5 (83-166)||(7678681-7678763)
chr5 (79-162)||(43557833-43557916)
chr5 (98-163)||(7359260-7359325)
chr5 (80-156)||(14667971-14668047)
chr5 (79-163)||(20367092-20367176)
[»] chr2 (9 HSPs)
chr2 (79-163)||(12520061-12520145)
chr2 (80-162)||(10516749-10516831)
chr2 (79-163)||(9531599-9531683)
chr2 (79-163)||(12734899-12734983)
chr2 (79-166)||(13443904-13443991)
chr2 (79-162)||(13474214-13474297)
chr2 (79-165)||(9394627-9394713)
chr2 (79-163)||(9496065-9496149)
chr2 (106-162)||(11412936-11412992)
[»] chr3 (10 HSPs)
chr3 (79-162)||(40106620-40106703)
chr3 (79-165)||(54128578-54128664)
chr3 (82-162)||(38850323-38850403)
chr3 (79-163)||(39208807-39208891)
chr3 (79-163)||(48508434-48508518)
chr3 (79-162)||(14415260-14415342)
chr3 (79-157)||(23534576-23534653)
chr3 (84-162)||(30797822-30797900)
chr3 (98-163)||(45374476-45374541)
chr3 (103-163)||(43694770-43694830)
[»] scaffold0491 (1 HSPs)
scaffold0491 (88-156)||(3645-3713)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 40424462 - 40424678
Alignment:
Q  12 tttacataaaaataatatagataatctacattatataaatgttttaattcaatactgagttggcaatatatggtttataataaaatattatgacgtaatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  40424462 tttacataaaaataatatagataatctacattatataaatgttttaattcaatagtgaattggcaatatatggtttataataaaatattatgacgtaatt 40424561  T
Q  112 taatctatgtagtcgacctcatttagtaggataagacttg---gttgtttttgttatagttgacaatatataaagnnnnnnnnnnnatcaagtagcttat 208  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||           ||||||||||||||    
T  40424562 taatctatgtagtcgacctcatttagtaggataagacttggttgttgttgttgttatagttgacaatatataaag---ttttttttatcaagtagcttat 40424658  T
Q  209 ggactataaattcacctctt 228  Q
    ||||||||||||||||||||    
T  40424659 ggactataaattcacctctt 40424678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 28236384 - 28236465
Alignment:
Q  82 tggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||||| ||| |||||||||  ||||||| |||||||||| ||||| || ||||| |||||||||||||||||| |||||    
T  28236384 tggtttatgatagaatattatggtgtaatttgatctatgtagccgaccccacttagtgggataagacttggttgttgttgtt 28236465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 56375510 - 56375576
Alignment:
Q  100 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 166  Q
    |||||||| |||| ||| |||||| |||||||| ||||| |||||||||||||||||| ||||||||    
T  56375510 tatgacgtcatttgatccatgtagccgacctcacttagtgggataagacttggttgttgttgttata 56375576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 39708632 - 39708708
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttg 155  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||||||||| || ||||| ||||||||||||||||    
T  39708632 atatggtttatgatagaacactatgtcgtaatttgatccatgtagtcgaccccacttagtgggataagacttggttg 39708708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 55007945 - 55008029
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| |  ||||||||||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  55007945 atatggtttatgatagatcattatgacgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 55008029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 46226373 - 46226451
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||||||||| |||||||| ||||||| ||||||||  ||||||| ||||||| ||| | |||||| ||||| |||||    
T  46226373 atatggtttatgataaaatactatgacgaaatttaattcatgtagttgacctcacttattgggataaaacttgattgtt 46226451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 35690474 - 35690554
Alignment:
Q  83 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||||||||||| || |||||    
T  35690474 ggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggtttttgttgtt 35690554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 45184214 - 45184138
Alignment:
Q  81 atggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    |||||||||||||||| ||||||||||||||  ||  |||||| ||||| || ||||| ||||||| ||| ||||||    
T  45184214 atggtttataataaaacattatgacgtaattcgattcatgtagccgaccccacttagtgggataaggcttagttgtt 45184138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 22873682 - 22873608
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggt 153  Q
    |||||| |||| ||| || ||||| ||||||||||||| |||||| | ||| |||||||| ||||||| ||||||    
T  22873682 atatgggttatgatagaacattataacgtaatttaatccatgtagccaaccccatttagtgggataaggcttggt 22873608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 51421931 - 51422013
Alignment:
Q  81 atggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||| ||| || ||||||||||||||| ||| |||||| | | |||| ||||| ||||||  |||||||||| |||||    
T  51421931 atggtttatgatagaacattatgacgtaatttgatccatgtagccaatctcacttagtgggataaagcttggttgttgttgtt 51422013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 25575023 - 25575107
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || ||| ||  ||||||| ||| ||||||  |||| |||||||| ||||||| |||||||||| |||||    
T  25575023 atatggtttatgatagaacattgtggtgtaatttgatccatgtagcagaccccatttagtgggataaggcttggttgttgttgtt 25575107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 37798050 - 37798134
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||||||| |||| ||| |||||| ||||  |||||||| ||||||| ||||||| || |||||    
T  37798050 atatggtttatgatagaacaatatgacgtcatttgatcaatgtagccgactccatttagtgggataaggcttggttattgttgtt 37798134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 51438644 - 51438728
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||||||| || |||||| |||||||| ||| ||||||  ||||  | || || ||||||| |||||||||| |||||    
T  51438644 atatggtttataatataacattatggcgtaatttgatccatgtagctgacccaactttgtgggataaggcttggttgttgttgtt 51438728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 35323972 - 35324056
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||| ||||| || ||||| ||||||| |||||||||| |||||    
T  35323972 atatggtatataataaaatattatgacgtaatttgatccacgtagccgaccccacttagtgggataaggcttggttgttgttgtt 35324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 42584558 - 42584641
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || ||||||||||||||| |||| ||||| ||||| || ||||| |||||||||||| ||||| |||||    
T  42584558 atatggtttatgatagaacattatgacgtaatttgatct-tgtagccgaccccacttagtgggataagacttgattgttgttgtt 42584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 4955390 - 4955473
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||| |||||||||||| |||| |||||||||| || ||||||||||| |||| |||||  ||||||  ||||||||| ||||    
T  4955390 atatgatttataataaaacattacgacgtaatttgatttatgtagtcgatctcacttagtgagataaggtttggttgttgttgt 4955473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 32569772 - 32569709
Alignment:
Q  100 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||||| |||| || ||||||| ||||| |||||||| |||||||||||||||||| |||||    
T  32569772 tatgacgtcatttgatttatgtagccgaccccatttagtgggataagacttggttgttgttgtt 32569709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 15215495 - 15215406
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttatagt 168  Q
    ||||||||| ||||| || | |||||||| || | ||| |||||| ||||| || ||||||||||||| |||||||||| ||||| ||||    
T  15215495 atatggtttttaatagaacactatgacgtcatatgatccatgtagccgaccccacttagtaggataaggcttggttgttgttgttgtagt 15215406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 490534 - 490618
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||| ||||| |||||    
T  490534 atatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttgtttgttgttgtt 490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 18741840 - 18741908
Alignment:
Q  88 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 156  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  18741840 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 18741908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 18746804 - 18746872
Alignment:
Q  88 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 156  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  18746804 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 18746872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 30198349 - 30198265
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| |||||||||  ||| ||| |||||||| | ||||| || ||||| ||||||| |||||||||| |||||    
T  30198349 atatggtttatgatagaatattatggtgtagtttgatctatgttgccgaccccacttagtgggataaggcttggttgttgttgtt 30198265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 33076323 - 33076407
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||||||| |||||||||| ||||||| ||| |||||||   || || ||||| |||||||| ||| ||||| |||||    
T  33076323 atatggtttataatagaatattatgatgtaatttgatccatgtagttatccccacttagtgggataagatttgattgttgttgtt 33076407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 29520848 - 29520931
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| | ||| |||||||| ||||||  |||||||||| ||||    
T  29520848 atatggtttatgatagaacattatggcgtaatttgatccatgtagcccaccccatttagtgggataatgcttggttgttgttgt 29520931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 30783121 - 30783038
Alignment:
Q  83 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 166  Q
    |||||||||||||| ||||||| ||| ||| ||| |||||| ||||| ||| |||| |||||| |||||  |||| ||||||||    
T  30783121 ggtttataataaaacattatgaggtagtttgatccatgtagccgaccccatctagtgggataaaacttgactgttgttgttata 30783038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 35914684 - 35914601
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || |||||  ||||||||||||||||| ||||    
T  35914684 atatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgagataagacttggttgttgttgt 35914601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 26363712 - 26363768
Alignment:
Q  106 gtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||| ||| |||||||||||| || | ||| |||||||||||||||||| ||||    
T  26363712 gtaatttgatccatgtagtcgaccccactcagtgggataagacttggttgttgttgt 26363768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 34692605 - 34692669
Alignment:
Q  85 tttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagact 149  Q
    ||||| ||| ||||||||| |||||||| ||| | |||| |||| |||||||||||| |||||||    
T  34692605 tttatgatagaatattatgtcgtaatttgatcaacgtagccgacttcatttagtagggtaagact 34692669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 37768484 - 37768520
Alignment:
Q  85 tttataataaaatattatgacgtaatttaatctatgt 121  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  37768484 tttataatagaatattatgacgtaatttgatctatgt 37768520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 39702183 - 39702231
Alignment:
Q  109 atttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    |||| |||||||||| ||||| |||||||| |||||| |||||||||||    
T  39702183 atttgatctatgtagccgaccacatttagtgggataaaacttggttgtt 39702231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 34444555 - 34444639
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  34444555 atatggtttataataaaacattatggtgtaatttgatctatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 34444639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 25715409 - 25715326
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| ||||||||| |||||||| ||| |||||| |||||||| ||||| ||||||| |||||||||| ||||    
T  25715409 atatggtttatgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgttgttgt 25715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 8796408 - 8796492
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||||||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  8796408 atatggtttatgatagaacattatggcgtaatttaatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 8796492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 28090777 - 28090693
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| |||||||||||||||||| |||||    
T  28090777 atatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgtt 28090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 37462959 - 37462881
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| ||||||||||    
T  37462959 atatggtttatcatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgtt 37462881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 39896762 - 39896817
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatt 134  Q
    ||||||||||| ||| || |||||| |||||||||||  |||||||||||||||||    
T  39896762 atatggtttatgatataacattatggcgtaatttaattcatgtagtcgacctcatt 39896817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 28533687 - 28533749
Alignment:
Q  100 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    |||||||| |||| ||| |||||| ||||| || ||||| |||||||||||||||||| ||||    
T  28533687 tatgacgtcatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgt 28533749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 6084174 - 6084258
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| |||||||| ||| ||||| | || |||| ||||| ||||||| |||||||||| |||||    
T  6084174 atatggtttatgatagaacaatatggcgtaatttgatccatgtatttgatctcacttagtgggataaggcttggttgttattgtt 6084258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 25979314 - 25979230
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  25979314 atatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 25979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 38807754 - 38807670
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| ||||||||  || |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  38807754 atatggtttatgatagaacactatggcgtaatttgttccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 38807670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 51812708 - 51812792
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| ||||||||| ||||||||||| ||| ||  ||||| || | ||| ||||||| ||||||| || |||||    
T  51812708 atatggtttatgatagaatattatgccgtaatttaatatatatatacgaccccactaagtgggataaggcttggtttttgttgtt 51812792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 36101860 - 36101776
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || ||||||||||||||| ||| ||||||| |||| || ||||| ||||||| |||||||||| |||||    
T  36101860 atatggtttatgatagaacattatgacgtaatttgatccatgtagttgaccccacttagtgggataaggcttggttgttgttgtt 36101776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 5418293 - 5418357
Alignment:
Q  99 ttatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||| |||||||| ||| |||||||||||| |||||||| ||||||| |||||||||| |||||    
T  5418293 ttatggcgtaatttgatccatgtagtcgaccccatttagtgggataaggcttggttgttgttgtt 5418357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 25891087 - 25891171
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||||||| || ||||||  ||||||| ||| |||||| ||||| || |||||| |||||| |||||||||| |||||    
T  25891087 atatggtttataatagaacattatggtgtaatttgatccatgtagccgaccccacttagtacgataaggcttggttgttgttgtt 25891171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 17907781 - 17907723
Alignment:
Q  105 cgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||||| ||| |||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  17907781 cgtaatttgatccatgtagccgaccccatttagcaggataagacttggttgttgttgtt 17907723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 25731557 - 25731473
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||||||  |||| || |||||| |||||||| ||| ||||||  |||||| |||| | |||||||||||||||||| |||||    
T  25731557 atatggtttcgaatagaacattatggcgtaatttgatcaatgtagcagacctcgtttaatgggataagacttggttgttgttgtt 25731473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 40980011 - 40979928
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| ||||    
T  40980011 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 40979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 31681103 - 31681025
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    |||||| |||| ||| |||| ||||||||||||| ||| |||||| ||||| || ||||| ||| ||| ||||||||||    
T  31681103 atatggcttatgatagaatactatgacgtaatttgatccatgtagccgaccccacttagtgggaaaaggcttggttgtt 31681025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 9796288 - 9796361
Alignment:
Q  84 gtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||||||||||| ||||||||||||||  ||  |||||| |||||||| ||| | |||||||| || ||||||    
T  9796288 gtttataataaaacattatgacgtaattcgattcatgtagccgacctcacttaatgggataagatttagttgtt 9796361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 28355364 - 28355449
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtc-gacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| |||||| |||||| || ||||| ||| | |||||| |||| || ||||| ||||||| |||||||||| |||||    
T  28355364 atatggtttatgataaaacattatggcggaatttgatccacgtagtctgaccccacttagtgggataaggcttggttgttgttgtt 28355449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 2885805 - 2885721
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | ||||  ||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  2885805 atatggtttatgatagaacactatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 2885721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 7273299 - 7273383
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| |  | ||||||||||||| ||| |||||| ||||| || ||||| ||||||| |||| ||||| |||||    
T  7273299 atatggtttatgatatagcactatgacgtaatttgatccatgtagccgaccccacttagtgggataaggcttgattgttgttgtt 7273383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 9210787 - 9210703
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || ||||| ||||||| ||| |||||| |||||    
T  9210787 atatggtttatgatacaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataaggcttcgttgttgttgtt 9210703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 26332956 - 26332912
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtag 123  Q
    ||||||||||| ||| |||||||||||||||||| ||| ||||||    
T  26332956 atatggtttatgatagaatattatgacgtaatttgatccatgtag 26332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 28208411 - 28208327
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  28208411 atatggtttatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 28208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 1615285 - 1615223
Alignment:
Q  100 tatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    |||||||| |||| ||| |||||| |||||||||||||| |||||||||||||||||| ||||    
T  1615285 tatgacgtcatttgatccatgtagccgacctcatttagtgggataagacttggttgttgttgt 1615223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 34588 - 34504
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||| ||| ||||||  |||| || ||||| |||||||||||||||||| |||||    
T  34588 atatggtttatgatagaacattatggcgtaatttgatccatgtagctgaccccacttagtgggataagacttggttgttgttgtt 34504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 30031455 - 30031533
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| |||||||| ||||| ||||||| ||||||||||    
T  30031455 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgtt 30031533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 7513073 - 7513008
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggata 144  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||||| |||| || ||||| |||||    
T  7513073 atatggtttatgatagaacattatgacgtaatttgatctatgtagttgaccccacttagtgggata 7513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 12890774 - 12890858
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  12890774 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 12890858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 5096033 - 5096116
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||| |||||||| |||||||||| ||| | || ||||| |||||||  ||||||||| ||||    
T  5096033 atatggtttatgatagaacattatggcgtaatttgatctatgtagccgatcccacttagtgggataaggtttggttgttgttgt 5096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 608360 - 608438
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||||||| | ||| |||| |||||||| |||| ||| |||||| |||||  | ||||| ||||||||||||||||||    
T  608360 atatggtttttgatagaatactatgacgtcatttgatccatgtagccgaccctacttagtgggataagacttggttgtt 608438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 3206542 - 3206458
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||| ||||| || | |||| ||| |||| ||| |||||| ||||| || ||||| ||||||||||||||| || |||||    
T  3206542 atatggtttttaatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataagacttggttattgttgtt 3206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 11675729 - 11675813
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||| ||||||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  11675729 atatggtttatgatagaacattatggcgtagtttaatccatgtagccgaccccacttagttggataaggcttggttgttgttgtt 11675813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 18855806 - 18855892
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 165  Q
    ||||||||||| ||| || |||||  | |||||| ||| |||||| ||||| || ||||| |||||||||||||||||| |||||||    
T  18855806 atatggtttatgatagaacattatagcataatttgatccatgtagccgaccccacttagtgggataagacttggttgttgttgttat 18855892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 7678681 - 7678763
Alignment:
Q  83 ggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 166  Q
    |||||||||||||  ||||||| ||| ||| ||| |||||| ||||| || ||||| |||||| ||||||||||| ||||||||    
T  7678681 ggtttataataaac-attatgaggtagtttgatccatgtagccgaccccacttagtgggataaaacttggttgttgttgttata 7678763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 43557916 - 43557833
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||||| ||| || |||||||||| ||||| || ||||| ||||||| | |||||||| ||||    
T  43557916 atatggtttatgatagaacattatgacttaagttgatctatgtagccgaccccacttagtgggataaggcctggttgttgttgt 43557833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 7359325 - 7359260
Alignment:
Q  98 attatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||||||| ||| ||||||  |||| || ||||| ||| |||||||||||||| |||||    
T  7359325 attatgacgtaatttgatccatgtagctgaccccacttagtgggacaagacttggttgttgttgtt 7359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 14667971 - 14668047
Alignment:
Q  80 tatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 156  Q
    |||||||||| ||| || ||||||  ||||||| ||| |||||  ||||| || ||||| |||||||||||||||||    
T  14667971 tatggtttatgatagaacattatggtgtaatttgatccatgtaaccgaccccacttagtgggataagacttggttgt 14668047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 20367092 - 20367176
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| | | || ||||||||||||||| ||| || ||| | ||| || || |||||||||| |||||||||| |||||    
T  20367092 atatggtttatgacataacattatgacgtaatttgatccatatagccaaccccacttggtaggataaggcttggttgttgttgtt 20367176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 12520145 - 12520061
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| |||||| | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  12520145 atatggtttatgataaaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 12520061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 10516831 - 10516749
Alignment:
Q  80 tatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    |||| ||||| ||||||||||||| |||||||| ||| ||||||  || |||| ||||| ||||||| |||||||||| ||||    
T  10516831 tatgatttatgataaaatattatggcgtaatttgatccatgtagctgatctcacttagtgggataaggcttggttgttgttgt 10516749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 9531683 - 9531599
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||  || |||||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  9531683 atatggtttatgatggaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 9531599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 12734899 - 12734983
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | ||||  ||||||| ||| |||||||||||| || ||||| ||||||| |||||||||| |||||    
T  12734899 atatggtttatgatagaacactatggtgtaatttgatccatgtagtcgaccccacttagtgggataaggcttggttgttgttgtt 12734983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 13443991 - 13443904
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttata 166  Q
    ||||||||||| ||| || |||||| ||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| || ||||||||    
T  13443991 atatggtttattatagaacattatggcgtcatttgatcgatgtagccgaccccatttagtgggataaggcttagttattgttgttata 13443904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 13474297 - 13474214
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| |||| | |||||| | |||||| ||||||  |||||||  || ||||| |||||||||||||||||| ||||    
T  13474297 atatggtttatgataatacattatggcataatttgatctattgagtcgactccacttagtgggataagacttggttgttgttgt 13474214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 9394713 - 9394627
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 165  Q
    ||||||||||||||| |  |||||| | |||||| ||| |||||| | ||| || || |||||||||||||| |||||| |||||||    
T  9394713 atatggtttataatagagcattatggcttaattttatccatgtagccaaccccacttggtaggataagactttgttgttgttgttat 9394627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 9496065 - 9496149
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || |||||| |||||||| ||| |||||| | ||| || ||||| ||| ||| |||||||||| |||||    
T  9496065 atatggtttatgatagaacattatggcgtaatttgatccatgtagccaaccccacttagtgggacaaggcttggttgttgttgtt 9496149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 11412936 - 11412992
Alignment:
Q  106 gtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||| ||| |||||| ||| |||| ||||||||||||| |||||||||| ||||    
T  11412936 gtaatttgatccatgtagccgaactcacttagtaggataaggcttggttgttgttgt 11412992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 40106703 - 40106620
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||||| |||||| ||| ||||||| |||| || ||||| ||||||| |||||||||| ||||    
T  40106703 atatggtttatgatagaacattatgacataatttgatcaatgtagtggaccccacttagtgggataaggcttggttgttgttgt 40106620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 54128578 - 54128664
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgttat 165  Q
    ||||||||||| ||| || |||||| | |||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||||    
T  54128578 atatggtttatgatagaacattatggcataatttgatccatgtaggcgaccccacttagtgggataaggcttggttgttgttgttat 54128664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 38850323 - 38850403
Alignment:
Q  82 tggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    |||||||| ||| || | ||||||||||||| ||| |||||| ||||| || |||||||||||| |||| |||||| ||||    
T  38850323 tggtttatgatagaacactatgacgtaatttgatccatgtagccgaccccacttagtaggataaaacttagttgttgttgt 38850403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 39208807 - 39208891
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || ||||||||||||||| ||| ||||||  |||| || ||||| ||||| | |||||||||| |||||    
T  39208807 atatggtttatgatagaacattatgacgtaatttgatccatgtagaggaccccagttagtgggatatggcttggttgttgttgtt 39208891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 48508434 - 48508518
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||||||||| ||| || | |||| |||||||| ||| |||||| ||||| || ||||| ||||||| |||||||||| |||||    
T  48508434 atatggtttatgatagaacactatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtt 48508518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 14415342 - 14415260
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    ||||||||||| ||| || |||||| | |||||| ||| |||||| ||||| || ||||| |||||||||||||||||| ||||    
T  14415342 atatggtttatgatataacattatggcataatttgatc-atgtagccgaccccacttagtgggataagacttggttgttgttgt 14415260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 23534653 - 23534576
Alignment:
Q  79 atatggtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtt 157  Q
    ||||| ||||| ||| || |||||| |||||||| ||| ||||||||||||||| || || ||||||| ||||||||||    
T  23534653 atatgatttatgatagaacattatggcgtaatttgatccatgtagtcgacctcactttgt-ggataaggcttggttgtt 23534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 30797900 - 30797822
Alignment:
Q  84 gtttataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgt 162  Q
    |||||| ||| || ||||||||||||||| |||||||||  ||||| || ||||| | ||||| |||||||||| ||||    
T  30797900 gtttatgatagaacattatgacgtaatttgatctatgtaaccgaccccacttagtggaataaggcttggttgttgttgt 30797822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 45374541 - 45374476
Alignment:
Q  98 attatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    |||||| |||||||||||| ||||||  |||| || ||||| ||||||| |||||||||| |||||    
T  45374541 attatggcgtaatttaatccatgtagctgaccccacttagtgggataaggcttggttgttgttgtt 45374476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 43694830 - 43694770
Alignment:
Q  103 gacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgtttttgtt 163  Q
    ||||| |||| |||||||||||||||| |||||||| ||||||  || ||||||| |||||    
T  43694830 gacgtcatttgatctatgtagtcgaccccatttagtgggataaagctgggttgttgttgtt 43694770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 3645 - 3713
Alignment:
Q  88 ataataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgt 156  Q
    |||||| || ||||||||||||||| ||| | |||| ||||| || ||||| |||||||||||||||||    
T  3645 ataatagaacattatgacgtaatttgatccaagtagccgaccccacttagtgggataagacttggttgt 3713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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