View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_48 (Length: 226)
Name: NF2602_high_48
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_48 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 45630392 - 45630273
Alignment:
| Q |
39 |
gtacaatttcagcatggttttatgtacaatataagacnnnnnnnnaaagaatacagtaaatgacttgtgtcttatataaatacaagtccaaataaaattt |
138 |
Q |
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| T |
45630392 |
gtacaatttcagcatggttttatgtacaatataagacttttttttaaagaatacagtaaatgaattgtgtcttacataaatacaagtctaaataaaattt |
45630293 |
T |
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| Q |
139 |
atttgcacacacatttattg |
158 |
Q |
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| T |
45630292 |
atttgcacacacatttattg |
45630273 |
T |
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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 48217164 - 48217272
Alignment:
| Q |
41 |
acaatttcagcatggttttatgtacaatataagacnnnnnnnnaaagaatacagtaaatgacttgtgtcttatataaatacaagtccaaataaaatttat |
140 |
Q |
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| T |
48217164 |
acaatttcatcatggttttatgtacagtgtaagactttttttaaaagaatacagtaaaagacttgtgtcttacgtaaatacaaatctaaataaaatttat |
48217263 |
T |
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| Q |
141 |
ttgcacaca |
149 |
Q |
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| T |
48217264 |
ttgcacaca |
48217272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 43389595 - 43389639
Alignment:
| Q |
108 |
tcttatataaatacaagtccaaataaaatttatttgcacacacat |
152 |
Q |
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| T |
43389595 |
tcttatatagatacaagtctaaataaaatttatatgaacacacat |
43389639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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