View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_high_5 (Length: 549)
Name: NF2602_high_5
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 4363270 - 4362754
Alignment:
| Q |
18 |
aggaacatggaacacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363270 |
aggaacatggaacacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcata |
4363171 |
T |
|
| Q |
118 |
ttccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactata |
217 |
Q |
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| T |
4363170 |
ttccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactata |
4363071 |
T |
|
| Q |
218 |
acacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaaca |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4363070 |
acacaaagtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaaca |
4362971 |
T |
|
| Q |
318 |
accttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaacttgctggtgagaatgctttggag |
417 |
Q |
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| T |
4362970 |
accttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagattgcaggtggtgaacttgctggtgagaatgctttggag |
4362871 |
T |
|
| Q |
418 |
agatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagaggttgcttgagggtgataatt |
517 |
Q |
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| T |
4362870 |
agatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagaggttgcttgagggtgataatt |
4362771 |
T |
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| Q |
518 |
ggaggaaatttgtggat |
534 |
Q |
| |
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||||||||||||||||| |
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| T |
4362770 |
ggaggaaatttgtggat |
4362754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 4371073 - 4370558
Alignment:
| Q |
18 |
aggaacatggaacacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcata |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4371073 |
aggaacatggaacacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcata |
4370974 |
T |
|
| Q |
118 |
ttccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370973 |
ttccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactata |
4370874 |
T |
|
| Q |
218 |
acacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4370873 |
acacaaggtttcatgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaaca |
4370774 |
T |
|
| Q |
318 |
accttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaacttgctggtgagaatgctttggag |
417 |
Q |
| |
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|||| | |||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4370773 |
acctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgagaatgcattggag |
4370674 |
T |
|
| Q |
418 |
agatatgattcaagtgcttatggtcaagttttgtcaacaagtggattaagtgcttttacatatctaagaataaataagaggttgcttgagggtgataatt |
517 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
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| T |
4370673 |
agatatgattcaagtgcttatggtcaagttttgtctacaagtggattaagtgcttttacttatttaagaataaataagaggttgcttgagggtgaaaatt |
4370574 |
T |
|
| Q |
518 |
ggaggaaatttgtgga |
533 |
Q |
| |
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||||| |||||||||| |
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| T |
4370573 |
ggaggcaatttgtgga |
4370558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 459
Target Start/End: Original strand, 41043862 - 41044224
Alignment:
| Q |
97 |
cttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactg |
196 |
Q |
| |
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||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| ||| |
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| T |
41043862 |
cttgtatcagccaaagaaatattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctg |
41043961 |
T |
|
| Q |
197 |
aattaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcat |
296 |
Q |
| |
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|| ||||||| |||||||||||||| || | ||||||| ||| | ||||| || ||||| ||||||| |||| ||| | | |||||||| ||||| |
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| T |
41043962 |
aactaactgctggttactataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcat |
41044061 |
T |
|
| Q |
297 |
ggaaatgaaggataatgaacaaccttgtgatgcaaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagatggcaggtggtgaactt |
396 |
Q |
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||||||||| || | ||||||||| | |||| || ||||| |||||||| || || | ||||| | | ||||||||| ||||| | |||||| |
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| T |
41044062 |
ggaaatgaaagacagagaacaacctggacatgctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatggctaatatagaactt |
41044161 |
T |
|
| Q |
397 |
gctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagt |
459 |
Q |
| |
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||||| || ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
41044162 |
gctggggaaaatgcactggagagatatgattcaggtggatatgctcaagttttgtcaacaagt |
41044224 |
T |
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