View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2602_low_1 (Length: 804)
Name: NF2602_low_1
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 39923025 - 39922591
Alignment:
| Q |
19 |
gttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagacgcacatgtactagaagttgagatttttaact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39923025 |
gttttctaccttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagacgcacatgtactagaagttgagatttttaact |
39922926 |
T |
|
| Q |
119 |
ttacaaattcacagcaaaatggcattctaaacatgaacatacgtataagtccgcaaaactaaatcaaacccatactatatcacatcaccaagaaaggatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39922925 |
ttacaaattcacagcaaaatggcattctaaacat------acgtataactccgcaaaactaaatcaaacccatactatatcacatcaccaagaaagcatt |
39922832 |
T |
|
| Q |
219 |
atgtatctatggactttttgttttaaggat--atctatgaacttataatcaacatactctagcaaaaatggtattaacttggacccttgatcatttaatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922831 |
atgtatctatggactttttgttttaaggatgtatctatgaacttataatcaacatactctagcataaatggtattaacttggacccttgatcatttaatt |
39922732 |
T |
|
| Q |
317 |
taatgtttgatcattgaccaatgtgtatgnnnnnnnnnnnnnnnnnnnnnnncgaaccgttaaatggaatatcaattttctggagagattagtttctgct |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922731 |
taatgtttgatcattgaccaatgtgtatgaaaaaatatatatcaaaaaatatcgaaccgttaaatggaatatcaattttctggagagattagtttctgct |
39922632 |
T |
|
| Q |
417 |
catgcgtgtataacagacagtataagataccttaatttact |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922631 |
catgcgtgtataacagacagtataagataccttaatttact |
39922591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 631 - 789
Target Start/End: Complemental strand, 39922419 - 39922261
Alignment:
| Q |
631 |
ttgtagtaatggtaatcgtgctcctgttaataatcatatcaatgatcaattgatcatgcttctgctaatggtcacccttagcaatagcatactgtggaga |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39922419 |
ttgtagtaatggtaatcgtgctcctgttaataatcatatcaatgatcaattgatcatgcttctgctaatggtcacccttagcaatagcataccgtggaga |
39922320 |
T |
|
| Q |
731 |
gtcaagctgaaggttatcgacattaaaagtagagaagaaagaatcatggaatatatttt |
789 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922319 |
gtcaagctgaaggttatcgacattaaaagtagagaagaaagaatcatggaatatatttt |
39922261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 511 - 635
Target Start/End: Complemental strand, 39922591 - 39922467
Alignment:
| Q |
511 |
ttgtgaattgatttttatcatttatatttgcatagttcacaattgtatcaaatttactagagtagaacctagaaaatgtggtttctaaatgaatgtacat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922591 |
ttgtgaattgatttttatcatttatatttgcatagtacacaattgtatcaaatttactagagtagaacctagaaaatgtggtttctaaatgaatgtacat |
39922492 |
T |
|
| Q |
611 |
cgagacacgataataaagtgttgta |
635 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39922491 |
cgagacacgataataaagtgttgta |
39922467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University