View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_11 (Length: 464)
Name: NF2602_low_11
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 36470241 - 36470440
Alignment:
| Q |
20 |
ttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagttcttatgtactcacagtt |
119 |
Q |
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| T |
36470241 |
ttctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagtgcttatgtactcacagtt |
36470340 |
T |
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| Q |
120 |
gtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaatagtactattttgtttcacttacgactc |
219 |
Q |
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| T |
36470341 |
gtgcattcacctttcatacatccattccatatagaaaaattcgacacttcattctcatgaatccgtctttaatagttctattttgtttcacttacgactc |
36470440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 292 - 453
Target Start/End: Original strand, 36470444 - 36470605
Alignment:
| Q |
292 |
gcgcatgtgttggttaggcttcatattgagaaagtaaactatttcccactctaaatccaaaatcatatgtgagattatttgatgtaaatgattgatttgc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36470444 |
gcgcatgtgttggttaggcttcatattgagaaagtaaactatttcccactctaaatccaaaaccatatgtgagattatttgatgtaaatgattgatttgc |
36470543 |
T |
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| Q |
392 |
aaatagaatttggataggatgctattgattcacaagtagaacacttcaaatgttgttcatct |
453 |
Q |
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| T |
36470544 |
aaatagaatttggataggatgctattgattcacaagtagaacacttcaaatgttgttcatct |
36470605 |
T |
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