View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2602_low_13 (Length: 440)
Name: NF2602_low_13
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 21403375 - 21403101
Alignment:
| Q |
20 |
taaggttgaattaaattcaagttaaaatcaaatttggtatatgttctatccgtcttcgccatccgccacttatatttattcacaaagccggtagtgataa |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | | ||||||||||||||||||||||||||||||| || |
|
|
| T |
21403375 |
taaggttgaattaaattcaagtcaaaatcaaatttggtatatgctctatctgtcttcgccacctgtcacttatatttattcacaaagccggtagtgacaa |
21403276 |
T |
|
| Q |
120 |
gtgtggtgaatgtgtattcgaaaaatcttaagtgtcaatttaacatattgagaaaatacattttccacatagaaaatatataaagtttttataagagttt |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
21403275 |
gtgtggtggatgtgtattcgaaaaatcttaagtgtcaatttgacatattgagaaaatacattttcgacatggaaaatatataaagtttttataagagttt |
21403176 |
T |
|
| Q |
220 |
atgaaaagagtcactcttcttttgcaagtaattttataaggctactctttccaaaaatttaatgtgacaagtaat |
294 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21403175 |
atgaaaagagtcactcatcttttgcaagtaattttataaggctactctttccaaaaatttaaggtgacaagtaat |
21403101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 21403073 - 21402933
Alignment:
| Q |
293 |
ataccctatgatataattaattgtatccccatctagttaaatcattgactaaagtccacaaatattttagtttctttcctttcttttacgacaatgaaaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21403073 |
ataccctatgatataattaattgtatccccatctagttaaatcattgactaaagtccacaaatattttagtttcttttctttcttttacgacaatgaaaa |
21402974 |
T |
|
| Q |
393 |
ttggaaaaacacgtcaagattttacacaccttttcatctca |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21402973 |
ttggaaaaacacgtcaagattttacacacctttccatctca |
21402933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University