View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_14 (Length: 437)
Name: NF2602_low_14
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 36 - 418
Target Start/End: Original strand, 27928549 - 27928934
Alignment:
| Q |
36 |
tcaaatatcttataggacatacgctcgtagtttacaaggatgatatgatcgtaaaattcaaacaaggggttgattgatcatatca---accttaaaaagg |
132 |
Q |
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| T |
27928549 |
tcaaataccttataagatatatgcccgtagtttacatggatgatatgatcgtaaaattcaaacaagaggttgattgatcatatcatcaaccttaaaaagg |
27928648 |
T |
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| Q |
133 |
tcttcgagtagacgagaaagtataacacatgtttgaagcctgaaaagtgcatgtttggggcgcggagaggaaaatacctaggcttcgatataacagaatg |
232 |
Q |
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| T |
27928649 |
tcttcgagtagacgagaaagtataacacatgtttgaagcctgaaaagtgcatgtttggggcgtggagaggaaaatacctaggcttcgatataacaaaatg |
27928748 |
T |
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| Q |
233 |
aggaattgaagcaaatctagacaaatgtcaaacatttgtataatgtcaaactcaaacttcaaagaaaacaattgaaacctcaatggtatgctaacaacgt |
332 |
Q |
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| T |
27928749 |
aggaattgaagcaaatctaaacaaatgtcaaacatttgtataatgtcaaactcaaactttaaagaaaacaattgaaacctcaatggtatgctaacaacgt |
27928848 |
T |
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| Q |
333 |
tatcacgcttcatggcaaagtttgttcaacgcacactccccttcttcaagctctcgaggaaagaagcatcattggaatggattgac |
418 |
Q |
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| T |
27928849 |
tatcacgcttcatggcaaagtttgttcaacgcacactccccttcttcaagctctcgaggaaagaagcatcattggaatggattgac |
27928934 |
T |
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