View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_17 (Length: 406)
Name: NF2602_low_17
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 27515690 - 27515354
Alignment:
| Q |
18 |
attgaagtgtaggagctaatttctgcttaggagataagaaaatagttaaagtaatcatgttcaacttttgcnnnnnnngaatttatgtgaaacatttaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27515690 |
attgaagtgtaggagctaatttctgcttaggagataataaaatagttaaagtaatcatgttcaacttttgctttttttgaatttatgtgaaacatttaac |
27515591 |
T |
|
| Q |
118 |
gaaactatacctcttaaatataatcaatggaaaaaggaattttctgaagacaggccaaaactaattaatttggctaaattatcaatggttattgatttag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27515590 |
gaaactatacctcttaaatataatcaatggaaaaaggcattttctgaagacaggccaaaactaattaatttggctaaattatcaatggttattgatttag |
27515491 |
T |
|
| Q |
218 |
ttcaataactttagttatttacctggaattagcaaaacaggttttgttgcatagaaagatttagctggattttacagaaataaaagcaacagattatctt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27515490 |
ttcaataactttagttatttacctggaattagcaaaacaggttttattgcatagaaagatttagctggattttacagaaataaaagcaacagattatctt |
27515391 |
T |
|
| Q |
318 |
atttcaacaggctcaaagaacatagcttgtagtagga |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27515390 |
atttcaacaggctcaaagaacatagcttgtagtagga |
27515354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 27467652 - 27467980
Alignment:
| Q |
18 |
attgaagtgtaggagctaatttctgcttaggagataagaaaatagttaaagtaatcatgttcaacttttgcnnnnnnngaatttatgtgaaacatttaac |
117 |
Q |
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|||||||| ||| |||||||| | ||| |||||||||| |||||||||| |||| | |||||| |||| | |||| ||||||||| ||||||| |
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| T |
27467652 |
attgaagtttagatgctaatttttacttgggagataagacaatagttaaaataatgaggttcaaatttttctttttttgaatatatgtgaaatatttaac |
27467751 |
T |
|
| Q |
118 |
gaaactatacctcttaa-atataatca---atggaa--aaaggaattttctgaagaca--ggccaaaactaattaatttggctaaattatcaatggttat |
209 |
Q |
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|||||||||||||||| ||||||||| |||||| |||| ||||| |||||||| ||||||| ||||||||||| ||||||||| |||||||| |
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| T |
27467752 |
caaactatacctcttaatatataatcatcaatggaataaaagacattttttgaagacataggccaaacctaattaatttaactaaattattaatggttaa |
27467851 |
T |
|
| Q |
210 |
tgatttagttcaataactttagttatttacctggaattagcaaaacaggttttgttgcatagaaagatttagctggattttacagaaataaaagcaacag |
309 |
Q |
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||||||| ||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
27467852 |
tgatttatttcaaaaaatttagttatttacctggaattagcaaaacaggtattgctgcatagaaaggtttagctggattttacagaaataaaaatagcag |
27467951 |
T |
|
| Q |
310 |
attatcttatttcaacaggctcaaagaac |
338 |
Q |
| |
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||| |||| |||||||||||||||||||| |
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|
| T |
27467952 |
attgtcttttttcaacaggctcaaagaac |
27467980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 27475082 - 27475235
Alignment:
| Q |
172 |
ccaaaactaattaatttggctaaattatcaatggttattgatttagttcaataactttagttatttacctggaattagcaaaacaggttttgttgcatag |
271 |
Q |
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|
||||| ||||||||||| | ||||||||||||||||| ||||||| | ||| || | || | |||||||||||||||||||||||||| ||||||||||| |
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| T |
27475082 |
ccaaacctaattaatttcgttaaattatcaatggttaatgatttattgcaagaattctactaatttacctggaattagcaaaacaggtattgttgcatag |
27475181 |
T |
|
| Q |
272 |
aaagatttagctggattttacagaaataaaagcaacagattatcttatttcaac |
325 |
Q |
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|||| ||| | ||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
27475182 |
aaagggttaacaggattttacagaaataaaaataacagattgtcttttttcaac |
27475235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 27509506 - 27509439
Alignment:
| Q |
188 |
tggctaaattatcaatggttattgatttagttcaataactttagttatttacctggaattagcaaaac |
255 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
27509506 |
tggctaaataatcaatagttattgatttagttcaagaattttagttagctacctggaattagcaaaac |
27509439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 27504526 - 27504459
Alignment:
| Q |
188 |
tggctaaattatcaatggttattgatttagttcaataactttagttatttacctggaattagcaaaac |
255 |
Q |
| |
|
||||||||| |||| | ||||| |||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
27504526 |
tggctaaataatcagtagttatcgatttagttcaagaattttagttagctacctggaattagcaaaac |
27504459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 27522281 - 27522216
Alignment:
| Q |
21 |
gaagtgtaggagctaatttctgcttaggagataagaaaatagttaaagtaatcatgttcaactttt |
86 |
Q |
| |
|
||||| ||| |||| |||||| ||| |||||||||| | ||||||| ||||||||||||||||||| |
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| T |
27522281 |
gaagtatagaagcttatttcttcttgggagataagatattagttaaggtaatcatgttcaactttt |
27522216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 27478240 - 27478305
Alignment:
| Q |
18 |
attgaagtgtaggagctaatttctgcttaggagataagaaaatagttaaagtaatcatgttcaacttt |
85 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
27478240 |
attgaagtctaggtgctaatttctatttaggcgataagat--tagttaaaataatcatgttcaacttt |
27478305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 27478404 - 27478480
Alignment:
| Q |
185 |
atttggctaaattatcaatggttattgatttagttcaataactttagttatttacctggaattagcaaaacaggttt |
261 |
Q |
| |
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|||| ||||||| |||||| |||||||||||||| ||| || ||||| || | |||||||||||||||| ||||| |
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| T |
27478404 |
atttagctaaatcatcaatagttattgatttagtccaagaattttagctagctggctggaattagcaaaactggttt |
27478480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1756356 - 1756424
Alignment:
| Q |
18 |
attgaagtgtaggagctaatttctgcttaggagataagaaaatagttaaagtaatcatgttcaactttt |
86 |
Q |
| |
|
|||||||| |||||||| |||||| ||| |||||||||| | ||||| | |||||||||||||||||| |
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|
| T |
1756356 |
attgaagtataggagctgatttcttcttgggagataagatattagttgagataatcatgttcaactttt |
1756424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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