View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_18 (Length: 403)
Name: NF2602_low_18
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 72 - 380
Target Start/End: Complemental strand, 36162037 - 36161731
Alignment:
| Q |
72 |
ttcatatactttactttcactcgtttttcatacacaagatcgaatcaaggctctcaataccaatagttaagaacaat-gtggtttgcacacacactctct |
170 |
Q |
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| T |
36162037 |
ttcatatactt-actttcactcgcttttcttacacaagatcgaatcaaggctctcaataccaatagttaagaacaatagtggtttgcacacacactctct |
36161939 |
T |
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| Q |
171 |
ttatacacaaagaagaacaatattgaaaatatccttgtatattggcatgcatcttgttgagtcccacatcgatctaattattaggctcattcaatttgta |
270 |
Q |
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| T |
36161938 |
ttatacaca--gaagaatactattgaaaatatccttgtatattggcatgcatcttgttgagtcccacatcgatctaattattaggctcattcaatttgta |
36161841 |
T |
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| Q |
271 |
actaactcaagaaccaacaaatcaaccacttttaactaactaacaataatagaaattgtaatcatctttcaacattcatgttgtctgtggctttagccaa |
370 |
Q |
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| T |
36161840 |
actaactcaagaaccaacaaaccaaccacttttaactaactaacaataatagaaattgtaatcatctttcaacattcatgttgtgtatggctttagccaa |
36161741 |
T |
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| Q |
371 |
catatttagg |
380 |
Q |
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| T |
36161740 |
catatttagg |
36161731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 156 - 380
Target Start/End: Complemental strand, 36153144 - 36152912
Alignment:
| Q |
156 |
gcacacacactctctttatacacaaagaagaacaatattgaaaatatc-cttgtatattggcatgcatcttgttgagtcccacatcgatctaattattag |
254 |
Q |
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| T |
36153144 |
gcacacacactctctttatacacaaagaagaatattattgaaaatatctcttgtatattggcatgcatcttgttgaatcccacatcaatctaattattag |
36153045 |
T |
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| Q |
255 |
gctcattcaatttgtaac----taactcaagaaccaacaaatcaaccactttta---actaactaacaataatagaaattgtaatcatctttcaacattc |
347 |
Q |
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| T |
36153044 |
gctcattcaatttgtaactaagtaactcaagaactgacaaatcaaccgcttttaactactaactaacaataatagaaattgcaatcatctttcaacattc |
36152945 |
T |
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| Q |
348 |
atgttgtctgtggctttagccaacatatttagg |
380 |
Q |
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| T |
36152944 |
atgttgtttgtggctttaaccaacgtatttagg |
36152912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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