View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2602_low_19 (Length: 402)

Name: NF2602_low_19
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2602_low_19
NF2602_low_19
[»] chr6 (2 HSPs)
chr6 (174-367)||(6861368-6861561)
chr6 (4-200)||(6861145-6861354)
[»] chr4 (2 HSPs)
chr4 (225-268)||(31699477-31699520)
chr4 (219-268)||(37306398-37306447)
[»] chr3 (1 HSPs)
chr3 (225-268)||(50320552-50320595)
[»] chr1 (2 HSPs)
chr1 (225-268)||(24886177-24886220)
chr1 (360-402)||(1395366-1395408)
[»] chr5 (1 HSPs)
chr5 (219-268)||(30892247-30892296)
[»] chr8 (1 HSPs)
chr8 (220-268)||(6580968-6581016)
[»] chr7 (1 HSPs)
chr7 (220-268)||(41873429-41873477)
[»] chr2 (1 HSPs)
chr2 (220-268)||(5139963-5140011)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 174 - 367
Target Start/End: Original strand, 6861368 - 6861561
Alignment:
Q  174 tgaaaattttacctagacaaggtatcatcacataatgctaggatacaagataaatgctaagaatactttctttctagcactctctctaatactcattatc 273  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6861368 tgaaaattttacctagacaaggtatcatcaaataatgctaggatacaagataaatgctaagaatactttctttctagcactctctctaatactcattatc 6861467  T
Q  274 ttatttttgtgtggtatcaccatgaatttcatccaataaaaaataggtatttgagagtgttaaaaaggctcgttatgtaaacctatataaacat 367  Q
    |||||| | ||||  |||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6861468 ttatttctctgtgaaatccacatgaatttcatccaataaaaaataggtatttgagagtgttagaaaggcttgttatgtaaacctatataaacat 6861561  T

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Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 6861145 - 6861354
Alignment:
Q  4 aaaattaattaggaacctttacaatccagatattttcaattggattattattggagtgtt----agagagt---------gggactctagaatttctcca 90  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||     |||||||         |||||||||| |||||||||    
T  6861145 aaaattaattaggaacctttacgatccagatattctcaattggattattattgaagtgtgttaaagagagtattagaggtgggactctagcatttctcca 6861244  T
Q  91 aataaattgaccaaactgtgaaattattgaagaaaagtacttcaaaacttttgttagaaaacccgcaagagatttcaccaacctgaaaattttacctaga 190  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6861245 aataaattgaccaaactgggaaattattgaagaaaagtacttcaatacttttgttagaaaacccgcaagagatttcaccaacctgaaaattttacctaga 6861344  T
Q  191 caaggtatca 200  Q
    ||||||||||    
T  6861345 caaggtatca 6861354  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 31699477 - 31699520
Alignment:
Q  225 aaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||    
T  31699477 aaatgctaagaacactctctttctagcactctctctaacactca 31699520  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 37306398 - 37306447
Alignment:
Q  219 caagataaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    ||||| |||||||| ||| ||| ||||||||||||||||||||| |||||    
T  37306398 caagagaaatgctaggaacactctctttctagcactctctctaacactca 37306447  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 50320595 - 50320552
Alignment:
Q  225 aaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||    
T  50320595 aaatgctaggaacactttctttctagcactctctctaacactca 50320552  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 24886220 - 24886177
Alignment:
Q  225 aaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||    
T  24886220 aaatgctaagaacactctctttctagcactctctctaacactca 24886177  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 1395408 - 1395366
Alignment:
Q  360 ataaacatggttgcggttgcggtgcataaggaaatccttatgc 402  Q
    ||||| ||||||||||||  |||||||||||||||||||||||    
T  1395408 ataaatatggttgcggttatggtgcataaggaaatccttatgc 1395366  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30892296 - 30892247
Alignment:
Q  219 caagataaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    ||||| |||||||| ||| ||| ||||||||||||||||||||| |||||    
T  30892296 caagagaaatgctaggaacactctctttctagcactctctctaacactca 30892247  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 6581016 - 6580968
Alignment:
Q  220 aagataaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  6581016 aagagaaatgttaagaacactctctttctagcactctctctaacactca 6580968  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 41873429 - 41873477
Alignment:
Q  220 aagataaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| |||||    
T  41873429 aagagaaatgctaggaacactctctttctagcactctctctaacactca 41873477  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 5139963 - 5140011
Alignment:
Q  220 aagataaatgctaagaatactttctttctagcactctctctaatactca 268  Q
    |||| |||||||| ||| ||| ||||||||||||||||||||| |||||    
T  5139963 aagagaaatgctaggaacactctctttctagcactctctctaacactca 5140011  T

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