View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_2 (Length: 660)
Name: NF2602_low_2
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 154 - 652
Target Start/End: Complemental strand, 30664055 - 30663558
Alignment:
| Q |
154 |
tcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatacnnnnnnngtctccaactatgtttcagtttcgaca |
253 |
Q |
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| T |
30664055 |
tcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatactttttttgtctccaactatgtttcagtttcgaca |
30663956 |
T |
|
| Q |
254 |
acatcatagacattttatataactacacttacaatggcactcaatatttacctaaaaaatatctgtgtggatctcacaatccttctttccgttgttacgg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30663955 |
acatcatagacattttatataactacacttacaatggcactcaatatttacctaaaaaatatctgtgtggatctcacaatccttctttccgttgttacgg |
30663856 |
T |
|
| Q |
354 |
caatgatatgtttgcagaaaattcaggtctgaagagatgtgagaaagatattgaagtgccgataggaccagattttcttgaagatatagattattttgat |
453 |
Q |
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| T |
30663855 |
caatgatatg-ttacggcaatgataggtctgaagagatgtgagaaagatattgaagtgccgataggaccagattttcttgaagatatagattattttgat |
30663757 |
T |
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| Q |
454 |
catgacgatcttgatagaggtttggataagggatttgaggtggaatacagtgtgaatgaggaatgtttaaattgtttgggaaatgaattcaaactatcca |
553 |
Q |
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| T |
30663756 |
catgacgatcttgatagaggtttggataagggatttgaggtggaatacggtgtgaatgaggaatgtttaaattgtttgggaaatgaattcaaactatcca |
30663657 |
T |
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| Q |
554 |
tcaataataagtttgnnnnnnnnnnnnnngagtcaatagtaacttatcttggcatagtttgaattctttcaatccaatctttcttgaactccctatgct |
652 |
Q |
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| T |
30663656 |
tcaataataagtttgttttttttttttttgagtcaatagtaacttatcttggcatagtttgaattctttcaatccaatctttcttgaactccctgtgct |
30663558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 30664193 - 30664119
Alignment:
| Q |
16 |
gttttaacagttgcttatctaattaatcgtgttatattggggaaaaaatcgtcctttccactatggtggcgtgcc |
90 |
Q |
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| T |
30664193 |
gttttaacagttgcttatctaattaatcgtgttatattggggaaaaaatcgtcctttccactatggtggcgtgcc |
30664119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 540
Target Start/End: Original strand, 31222118 - 31222184
Alignment:
| Q |
474 |
tttggataagggatttgaggtggaatacagtgtgaatgaggaatgtttaaattgtttgggaaatgaa |
540 |
Q |
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| T |
31222118 |
tttggataagggatttgaggtagaatacagtgtgaatgagggatgtttaaattgtttgggaaatgaa |
31222184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 15493355 - 15493419
Alignment:
| Q |
155 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatac |
219 |
Q |
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| T |
15493355 |
cacattatcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatac |
15493419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 15523245 - 15523181
Alignment:
| Q |
155 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatac |
219 |
Q |
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| T |
15523245 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcctaaatttaatgatac |
15523181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 31012576 - 31012640
Alignment:
| Q |
155 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatgatac |
219 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
31012576 |
cacaccatgaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatataatgatac |
31012640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 30958768 - 30958822
Alignment:
| Q |
155 |
cacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat |
209 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30958768 |
cacaccatgaaactaaaaagaacagaccttgatcaaaatctttgttctcctcaat |
30958822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 31221942 - 31222000
Alignment:
| Q |
280 |
acttacaatggcactcaatatttacctaaaaaatatctgtgtggatctcacaatccttc |
338 |
Q |
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| T |
31221942 |
acttacaatgtctctcaagatttacttaaaaaatctctgtgtggatctcacaatccttc |
31222000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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