View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_20 (Length: 401)
Name: NF2602_low_20
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 117 - 360
Target Start/End: Complemental strand, 24410208 - 24409965
Alignment:
| Q |
117 |
gtcacttgttgaataggttattaagtataagcatgcagtgtttttagtttcattagtctgtggatgttcttgtggatgattataaaaatcacgattcatg |
216 |
Q |
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| T |
24410208 |
gtcacttgttgaataggttattaagtataagcatgcagtgtttttagtttcattagtctgtggatgttcttgtggatgattataaaaatcacgattcatg |
24410109 |
T |
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| Q |
217 |
aactgatatccaatagattgtgcataaatcagattattctaaatatttttatttaatgggtgcaggaacataattgtggtagactttactctaaatgaag |
316 |
Q |
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| T |
24410108 |
aactgatatccaatagattgtgcataaatcagattattctaaatatttttatttaatgggtgcaggaacataattgtggtagactttactctaaatgaag |
24410009 |
T |
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| Q |
317 |
tccaagatgtccaagaaaaaggtgtgacatacatatatatgttt |
360 |
Q |
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| T |
24410008 |
tccaagatgtccaagaaaaaggtgtgacatacatatatatgttt |
24409965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 24410360 - 24410264
Alignment:
| Q |
20 |
tgctattgattaattccctctgtattgaagtagtcacttgtttatacaagcctatgctcccgggatcttgtttaacataaactaattcatatgttag |
116 |
Q |
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| T |
24410360 |
tgctattgattaattccctctgtattgaagtagtcacttgtttatacaagcctatgctcccgggatcttgtttaacataaactaattcatatgttag |
24410264 |
T |
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