View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_21 (Length: 400)
Name: NF2602_low_21
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_21 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 1855253 - 1854871
Alignment:
| Q |
18 |
aaattaatttggaattgtctgtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggata |
117 |
Q |
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| T |
1855253 |
aaattaatttggaattgtctgtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggata |
1855154 |
T |
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| Q |
118 |
tggaacttttacacctccacaagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgct |
217 |
Q |
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| T |
1855153 |
tggaacttttacacctccacaggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgct |
1855054 |
T |
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| Q |
218 |
aatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctagagtaagggtgtttcgttatttataata |
317 |
Q |
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| T |
1855053 |
aatgcagcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctggagtaagggtgtttcgttatttataata |
1854954 |
T |
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| Q |
318 |
aaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgacca |
400 |
Q |
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| T |
1854953 |
aaaacccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgacca |
1854871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 1817969 - 1818102
Alignment:
| Q |
52 |
aaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcag |
151 |
Q |
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| T |
1817969 |
aaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccacaggtgtaattgcag |
1818068 |
T |
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| Q |
152 |
ccaggtaggacttgtttaggttgatcagatgcaa |
185 |
Q |
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| T |
1818069 |
cctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 1844913 - 1845015
Alignment:
| Q |
65 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcagccaggtaggactt |
164 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtatagttgcagccaggtaggactt |
1845012 |
T |
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| Q |
165 |
gtt |
167 |
Q |
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||| |
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| T |
1845013 |
gtt |
1845015 |
T |
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