View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2602_low_23 (Length: 390)
Name: NF2602_low_23
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 1750076 - 1750429
Alignment:
| Q |
17 |
aatatcgcaaccatgatagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgc |
116 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1750076 |
aatatcgcaacgatgatagcagcagtccatgataaataactaacttctacgattgaagttgcacttgatagttcaagtaagaataagatcccaaagacgc |
1750175 |
T |
|
| Q |
117 |
tgttatcaatagggcgtgatcgcgtaatggaaacaaggattatttgaaaacaggaaacaaaaaggacgacaaagaccgtgaggagaacgttatattttgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1750176 |
tgttatcaatagggcgtgatcgcgtaatggaaacaagcattatttgaaaacaggaaacaagaaggacgacaaagaccgtgaggacaacgttatattttgc |
1750275 |
T |
|
| Q |
217 |
catgaaattacgatcatctgataaattgtatagtatagggaagatgaccaatatcaagaataatgtcattgagctcatagctatgtctctatatctattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1750276 |
catgaaattacgatcatctgataaattgtatagtatagggaagatgaccaatatcaagaataatgtcattgagctcatggctatgtctctatatctattt |
1750375 |
T |
|
| Q |
317 |
gcaataagaaaaatgttcataagatcagattttatacatatattaggttagaatt |
371 |
Q |
| |
|
||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1750376 |
gcaataa-aaaaaagttcataagaacagattatatacatatattaggttagaatt |
1750429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 1754130 - 1754284
Alignment:
| Q |
32 |
atagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaatagggc |
131 |
Q |
| |
|
||||| ||| ||||||||| | |||||||||| ||||||||| || ||||||||||| |||||| ||||||||||||||||| | ||| ||| ||||||| |
|
|
| T |
1754130 |
atagcagcaatccatgatacaaaactaacttccatgactgaaattgcacttgatagtccaagtatgaataagatcccaaagatgttgtgatcgatagggc |
1754229 |
T |
|
| Q |
132 |
gtgatcgcgtaatggaaacaaggattatttgaaaacaggaaacaaaaaggacgac |
186 |
Q |
| |
|
| ||| |||||||||||||| || |||| |||||||||||| || |||||| |
|
|
| T |
1754230 |
gcgatacggtaatggaaacaagccttgattgataacaggaaacaagaaagacgac |
1754284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 1455830 - 1455927
Alignment:
| Q |
33 |
tagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaataggg |
130 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||||||||||||||| || || ||||||| ||||| ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
1455830 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggg |
1455927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 1567515 - 1567418
Alignment:
| Q |
33 |
tagccgcagtccatgataaataactaacttctatgactgaacttacacttgatagttcaagtaagaataagatcccaaagacgctgttatcaataggg |
130 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||||||||||||||| || || ||||||| ||||| ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
1567515 |
tagcagcagtccatgagaaaaaaccaacttctatgactgaaattgcagttgatagcaaaagtatgaataagatcccaaagattctgttgtcaacaggg |
1567418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University