View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_24 (Length: 372)
Name: NF2602_low_24
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_24 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 22415689 - 22415329
Alignment:
| Q |
12 |
catcatcatatgccgccggtagccggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacacataaatc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
22415689 |
catcatcatatgccgccggtagccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcaacagtatccgccatatcaacacataaatc |
22415590 |
T |
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| Q |
112 |
atggaagttggtggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaacatttgtt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22415589 |
atggaagttggtggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaagtttgaaacatttgtt |
22415490 |
T |
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| Q |
212 |
gcttttttaggtaggaataatcgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgagg |
311 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22415489 |
gcttttttaggtaggaataaccgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgagg |
22415390 |
T |
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| Q |
312 |
tgtgtggatcttcaaaatatcgagtaagtgtatcattgggatggtggtggattttgaggag |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22415389 |
tgtgtggatcttcaaaatatcgagtaagtgtatcattgggatggtgttggattttgaggag |
22415329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 22399855 - 22399497
Alignment:
| Q |
12 |
catcatcatatgccgccggtagccggtgctccggtgcgaggcgataatctaccgaagcgacaactgcttcgacagtatcagccatatcaacacataaatc |
111 |
Q |
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|||||||||| |||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| ||| |||| |||| |
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| T |
22399855 |
catcatcataagccgccggcaaccggtgctccggtgcgaggcgataatcgaccgaggcgacaactgcttcgacggtttccgccatttcagcacaaaaatt |
22399756 |
T |
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| Q |
112 |
atggaagttggtggaggctgcactttgcacgatgaagccactaccatgaaagaaaacaataattggtagtagcttgttgtttaggtttgaaacatttgtt |
211 |
Q |
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||||| | ||||||||||||||| | || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22399755 |
gtggaacattgtggaggctgcacttagtacaatgaagccacttccatgaaagaaaacaataagtggtagtagcttgttgtttaggtttgaaacatttgtt |
22399656 |
T |
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| Q |
212 |
gcttttttaggtaggaataatcgaagccatgtttggtttgattggttgatgaaaagatctttggtgagaacaggaagagatgtgtctaatgaaggtgagg |
311 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
22399655 |
gcttttttaggtagaaataatcgaagccatgtttggtttgattggttgatggtgagatctttggtgagaacagaaagagaagtgtctaatgaaggtgagg |
22399556 |
T |
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| Q |
312 |
tgtgtggatcttcaaaatatcgagtaagtgtatcattgggatggtggtggattttgagg |
370 |
Q |
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||||||||||||||| || |||||| |||||||| ||||||| ||| || | ||||||| |
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| T |
22399555 |
tgtgtggatcttcaagatttcgagtgagtgtatcgttgggattgtgttgaactttgagg |
22399497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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