View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2602_low_3 (Length: 642)
Name: NF2602_low_3
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Complemental strand, 10320169 - 10319555
Alignment:
| Q |
18 |
caaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcgtgcaaaatccgattgtacaggcgtgtcaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |
|
|
| T |
10320169 |
caaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcaga |
10320070 |
T |
|
| Q |
118 |
tgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10320069 |
tgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
10319970 |
T |
|
| Q |
218 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10319969 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcg |
10319870 |
T |
|
| Q |
318 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10319869 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
10319770 |
T |
|
| Q |
418 |
ttttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10319769 |
ttttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
10319670 |
T |
|
| Q |
518 |
ggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactc |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10319669 |
ggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctgttaaaactc |
10319570 |
T |
|
| Q |
618 |
tagtatgcatctctg |
632 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10319569 |
tagtatgcatctctg |
10319555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Complemental strand, 10337285 - 10336671
Alignment:
| Q |
18 |
caaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcgtgcaaaatccgattgtacaggcgtgtcaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |
|
|
| T |
10337285 |
caaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccaaattgtgcaaaatctgattgtacaggcctgtcaga |
10337186 |
T |
|
| Q |
118 |
tgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337185 |
tgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
10337086 |
T |
|
| Q |
218 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337085 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcg |
10336986 |
T |
|
| Q |
318 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336985 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
10336886 |
T |
|
| Q |
418 |
ttttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336885 |
ttttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
10336786 |
T |
|
| Q |
518 |
ggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactc |
617 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10336785 |
ggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactgatcattatctgttaaaactc |
10336686 |
T |
|
| Q |
618 |
tagtatgcatctctg |
632 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10336685 |
tagtatgcatctctg |
10336671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Complemental strand, 10299737 - 10299123
Alignment:
| Q |
18 |
caaactggataatatccttcagactccgatgcctcattgaatccagccttgaagtggttaatccagatcgtgcaaaatccgattgtacaggcgtgtcaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |
|
|
| T |
10299737 |
caaactggataatatccttcagactccgatgcctcaatgactgcagccttgaagtggttaatccaaattgtgcaaaatctgattgtacaggcatgtcaga |
10299638 |
T |
|
| Q |
118 |
tgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299637 |
tgagcctgtgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccgg |
10299538 |
T |
|
| Q |
218 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagccttttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10299537 |
ctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagcctttttg |
10299438 |
T |
|
| Q |
318 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299437 |
caattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtcaatcaaaaaacacgaagactta |
10299338 |
T |
|
| Q |
418 |
ttttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299337 |
ttttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttatagatatatacatacatttcta |
10299238 |
T |
|
| Q |
518 |
ggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299237 |
ggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactc |
10299138 |
T |
|
| Q |
618 |
tagtatgcatctctg |
632 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10299137 |
tagtatgcatctctg |
10299123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 498 - 614
Target Start/End: Complemental strand, 10338557 - 10338441
Alignment:
| Q |
498 |
gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt |
597 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | ||| | |||||||||||| |||||||||||| |||| ||||||||| |||||| |
|
|
| T |
10338557 |
gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaactt |
10338458 |
T |
|
| Q |
598 |
atcattatctgttaaaa |
614 |
Q |
| |
|
|| | | |||||||||| |
|
|
| T |
10338457 |
attactctctgttaaaa |
10338441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 375 - 632
Target Start/End: Original strand, 35632616 - 35632876
Alignment:
| Q |
375 |
gtaaagactcaaatt-gtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaa |
473 |
Q |
| |
|
||||||||||||||| ||| || || ||||||||| ||| ||||||||||||||| ||| | ||| ||| | ||||||| ||| ||||| || |||| |
|
|
| T |
35632616 |
gtaaagactcaaattcgtcatcgataaaaaaacac--agaattattttcattttcttaagactaaacaagcc--cgtgttttttcacaatacaaaaggaa |
35632711 |
T |
|
| Q |
474 |
aaatcaagaaaagaacaagttatagata------tatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatccca |
567 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| ||||| |
|
|
| T |
35632712 |
aaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactccca |
35632811 |
T |
|
| Q |
568 |
aagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctg |
632 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
35632812 |
aagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctg |
35632876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 75 - 334
Target Start/End: Original strand, 35632337 - 35632596
Alignment:
| Q |
75 |
ttaatccagatcgtgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaa |
174 |
Q |
| |
|
|||||||||| ||||||||||| ||| | | |||||||||| |||||| | |||||||||||||| |||| || ||||| ||||| || ||||| |||| |
|
|
| T |
35632337 |
ttaatccagaccgtgcaaaatcagatggcagaggcgtgtcaaatgagcatatgtaggacaaattatgtacgcgccgcctcagaaacaactttttggccaa |
35632436 |
T |
|
| Q |
175 |
gaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttcctt |
274 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||| ||||| | ||||| |||||| ||||| || | | |||||||||| || ||| |
|
|
| T |
35632437 |
gaacaaaacaatgacacttatatcatcatgaaaagacctcctgctcatattgtcgtgtcccagagcagcagcctggatgtccatataggtaacatttctt |
35632536 |
T |
|
| Q |
275 |
cttttagcagctaccgctagagcggtactcagaagccttttcgcaattccctgcaaaatc |
334 |
Q |
| |
|
|| || |||||| | |||||||| | | ||||||||||||| |||| ||||||||||||| |
|
|
| T |
35632537 |
ctgttggcagcttcagctagagcagaattcagaagcctttttgcaactccctgcaaaatc |
35632596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 289 - 632
Target Start/End: Original strand, 35629386 - 35629722
Alignment:
| Q |
289 |
cgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaata--attaaattaaaagcctgcaaatataactgtaaagactcaa |
386 |
Q |
| |
|
||||||| | ||||||| ||||||||| ||||||||||||||||||||||| || ||| | ||||| ||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
35629386 |
cgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaa |
35629485 |
T |
|
| Q |
387 |
att-gtcgtcaat-caaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaa |
484 |
Q |
| |
|
||| ||| | || |||||||||| || ||||||||||||||| ||||| | |||| ||| ||||| ||||||| ||||||| |
|
|
| T |
35629486 |
attcgtctttgatgcaaaaaacacaaatacttattttcattttataaagactaaat-------------------caaaatgaaaggaaaaaccaagaaa |
35629566 |
T |
|
| Q |
485 |
agaacaagttataga--------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatc |
576 |
Q |
| |
|
|||| |||| ||||| ||||||| ||||||||| ||||| ||||||||||||||| | |||| || ||||||||||||||||||||||||||| |
|
|
| T |
35629567 |
agaaaaagtcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatc |
35629666 |
T |
|
| Q |
577 |
agaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctg |
632 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
35629667 |
agaagcaaatataagaaacttgtcactatatgttaaaactctagtacgcatctctg |
35629722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 35629167 - 35629312
Alignment:
| Q |
70 |
agtggttaatccagatcgtgcaaaatccgattgtacaggcgtgtcagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttg |
169 |
Q |
| |
|
||||||||||||||| ||||||||| | ||| || ||| |||||||||||| | |||||||||||||| |||| ||| |||| |||||||||||||| |
|
|
| T |
35629167 |
agtggttaatccagaccgtgcaaaagcagatggtgtaggtctgtcagatgagcttttgtaggacaaattatgtacgggcatcctcagaaacgacgttttg |
35629266 |
T |
|
| Q |
170 |
tccaagaacaccacaatcacacttatatcatcatgaaaagacctcc |
215 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35629267 |
tcaaagaacacaacaatcacacttatatcatcatgaaaagacctcc |
35629312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 459 - 630
Target Start/End: Original strand, 35635959 - 35636136
Alignment:
| Q |
459 |
tcaatatgaatggaaaaatcaagaaaagaacaagttataga------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatt |
552 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| |||| ||||| |||| ||||| |||||| | ||| ||||||||||||||| | |||| || ||| |
|
|
| T |
35635959 |
tcaaaatgaaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatt |
35636058 |
T |
|
| Q |
553 |
tgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctc |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||| |||||| | ||||||| |
|
|
| T |
35636059 |
tgacaagaaatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctagaacgcatctc |
35636136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 35635631 - 35635732
Alignment:
| Q |
114 |
cagatgagcctctgtaggacaaattaagtacaggctgcctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacct |
213 |
Q |
| |
|
||||||||| | |||||||||||||| ||| ||| |||| ||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
35635631 |
cagatgagcttttgtaggacaaattatgtaggggcatcctcagaatcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaatacct |
35635730 |
T |
|
| Q |
214 |
cc |
215 |
Q |
| |
|
|| |
|
|
| T |
35635731 |
cc |
35635732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 35634262 - 35634333
Alignment:
| Q |
151 |
cctcggaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcac |
222 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
35634262 |
cctcagaaacgaatttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctgctcac |
35634333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 389
Target Start/End: Original strand, 35635807 - 35635906
Alignment:
| Q |
290 |
gctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt |
389 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||||||||||| |||| ||||| || |||| ||||| ||||||| ||||| ||||| |||| |||||||||| |
|
|
| T |
35635807 |
gctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaatt |
35635906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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