View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_30 (Length: 306)
Name: NF2602_low_30
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 10325743 - 10326032
Alignment:
| Q |
1 |
aaaagagtgaaaaaa-gtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcacacattgcttgaacaactttag |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
10325743 |
aaaagagtgaaaaaaagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaatttacatcacgcatttcttgaacaactttag |
10325842 |
T |
|
| Q |
100 |
gacattctaaaggacatgaatannnnnnncataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgctaattaggtgagcaagt |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10325843 |
gacattctaaaggacatgaatatttttttcataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgctaattaggtgagcaagt |
10325942 |
T |
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| Q |
200 |
gatggaaaacaataatgacacacgcgccataaaaaattcttaactttgggacacacttttaacttccatatcaatttccataggccaagt |
289 |
Q |
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| T |
10325943 |
gatggaaaacaataatgacacacgcgccatagaaaattcttaactttgggacacacttttaacttccatatcaatttccacaggccaagt |
10326032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 29094651 - 29094924
Alignment:
| Q |
15 |
agtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcacacattgcttgaacaactttaggacattcta-aagga |
113 |
Q |
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||||||| ||| ||| ||| ||| |||| ||| ||||| |||||||| ||||||||||||||| | || ||||||||||||| |||||| | ||| | |
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| T |
29094651 |
agtgcatatatgttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaa |
29094750 |
T |
|
| Q |
114 |
catgaatannnnnnncataactgctattactaagtacaaaatcaagtgggcaagaaacacgtttgctgctaattaggtgagcaagtgatggaaaacaata |
213 |
Q |
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| T |
29094751 |
cgtgaatattgtcttcataattgctattacaaagtacacaatcaagtgggcaagatacatctttgctactaa---ggcgagcacacgtttgaaaacagcc |
29094847 |
T |
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| Q |
214 |
atgacacacgcgccataaaaaattcttaactttgggacacacttttaacttccatatcaatttccataggccaagtg |
290 |
Q |
| |
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| | |||| |||||||| ||||||||| ||||||||| ||||||||||||| || ||||| ||| || |||||||| |
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| T |
29094848 |
acggcacatgcgccatagaaaattcttcactttgggagacacttttaactttcaaatcaaattcaatcagccaagtg |
29094924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 37837079 - 37837157
Alignment:
| Q |
1 |
aaaagagtgaaaaa-agtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
78 |
Q |
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| T |
37837079 |
aaaagagtgaaaatgagtgcatttatattataatcttgacgaaaaaccctatttattttgtcacataaaatcacatcac |
37837157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 17284357 - 17284420
Alignment:
| Q |
217 |
acacacgcgccataaaaaattcttaactttgggacacacttttaacttccatatcaatttccat |
280 |
Q |
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| T |
17284357 |
acacacgcgccatattaaattcttaactttgggaggcacctttaacttccatattaaattccat |
17284420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 37837279 - 37837351
Alignment:
| Q |
194 |
gcaagtgatggaaaacaataatgacacacgcgccataaaaaattcttaactttgggacacacttttaacttcc |
266 |
Q |
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||| ||| |||||||||| | ||||||||||||||||||||||||| |||||| || || ||||||||||| |
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| T |
37837279 |
gcacgtgttggaaaacaaccacgacacacgcgccataaaaaattcttgactttgagaggcatttttaacttcc |
37837351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 46077978 - 46077914
Alignment:
| Q |
216 |
gacacacgcgccataaaaaattcttaactttgggacacacttttaacttccatatcaatttccat |
280 |
Q |
| |
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|||||| ||||||||||||| |||||||| ||||| ||| |||||||||||||| || |||||| |
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| T |
46077978 |
gacacatgcgccataaaaaaatcttaactatgggaggcacctttaacttccatattaaattccat |
46077914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 39285879 - 39285773
Alignment:
| Q |
1 |
aaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatca-cacattgcttgaacaacttta |
98 |
Q |
| |
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|||| |||||||| |||||||||| |||| |||||||||||| ||| |||| |||||||| ||||||||||||||| |||| ||| |||||||||| |
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| T |
39285879 |
aaaatagtgaaaataagtgcatttccattataatcttgacgcaacaccttatttattttgtcccataaattcacatcatgtcatt-ctttaacaacttta |
39285781 |
T |
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| Q |
99 |
ggacattc |
106 |
Q |
| |
|
|||||||| |
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|
| T |
39285780 |
ggacattc |
39285773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2113800 - 2113722
Alignment:
| Q |
1 |
aaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
78 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||| || |||| || ||| |||||||||||| |||||||| |
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| T |
2113800 |
aaaagagtgaaaataagtgcatgtatattataatcttgacgaagcaccccatcgattgtgtctcataaatacacatcac |
2113722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3601889 - 3601967
Alignment:
| Q |
1 |
aaaagagtgaaaa-aagtgcatttatattacaatcttgacgcagaaccctattaattttgtctcataaattcacatcac |
78 |
Q |
| |
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|||||| |||||| |||||||| ||||||| |||||||||| | |||||||||| ||||| |||||||||||||||| |
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| T |
3601889 |
aaaagaatgaaaataagtgcatgtatattataatcttgacgaaacaccctattaagattgtcccataaattcacatcac |
3601967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 32895274 - 32895197
Alignment:
| Q |
190 |
gtgagcaagtgatggaaaacaataatgacacacgcgccataaaaaattcttaactttgggacacacttttaacttcca |
267 |
Q |
| |
|
||||||| ||| |||||||||| | ||||||| ||||| | ||||||||||| ||| ||| ||||||||||||||| |
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|
| T |
32895274 |
gtgagcacgtgttggaaaacaaccacgacacacacgccaaagaaaattcttaattttaggaggcacttttaacttcca |
32895197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 9809607 - 9809663
Alignment:
| Q |
224 |
cgccataaaaaattcttaactttgggacacacttttaacttccatatcaatttccat |
280 |
Q |
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|||||||||||| |||| ||||||||| | || |||||||||||||| || |||||| |
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| T |
9809607 |
cgccataaaaaactcttgactttgggagaaacctttaacttccatattaaattccat |
9809663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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