View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_31 (Length: 300)
Name: NF2602_low_31
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 27554306 - 27554019
Alignment:
| Q |
1 |
caatcgcattcactgcaaattaaaaactttaaaagacatgattcgtaataggacataagnnnnnnnnnnnnnnnnnn-gtatttaaggagaaagccaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| |
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| T |
27554306 |
caatcgcattcactgcaaattaaaaactttaaaagacatgattcttaaaaggacataagtttttgtttttttatttttgtatttaaggagaaagaaaaat |
27554207 |
T |
|
| Q |
100 |
caaagagaatgcattaaaatcacctccatgttgaattcatgacccacacttgtagtcttccactctctccaacagaaacaagccggttaggttcacaaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27554206 |
caaagagaatgcattaaaatcacctccatgttgaattcatgacccacacttgtagtcttccactctctccaacagaaacaagttggttaggttcacaaac |
27554107 |
T |
|
| Q |
200 |
caatatacaatgtaaatcttcaacagcttccagtgttgccataactgatgcataaccactttctacatgagcaatcttcaaagcattc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
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| T |
27554106 |
caatatacaatgtaaatcttcaacagcttccagtgttgccataactgatgcagagccactttctacatgaacaatcttcaaagcattc |
27554019 |
T |
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