View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_4 (Length: 571)
Name: NF2602_low_4
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 275 - 447
Target Start/End: Complemental strand, 11199193 - 11199018
Alignment:
| Q |
275 |
gtagagtaaccttcttaagggagagtgccaagtgtttactgtcaggcttcttagtaggcatagaatcaagatggtcacgtgcaaattggaaagcatgttt |
374 |
Q |
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| T |
11199193 |
gtagagtaaccttcttaagggagagtgccaagtgtttactgtcaggcttcttagtaggcatagaatcaagatggtcacgtgcaaattggaaagcatgttt |
11199094 |
T |
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| Q |
375 |
ctgcaaaggaagagacatgtcacaagctttgacatgaatgctgtt---gttgagtttaatattatttttataatca |
447 |
Q |
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| T |
11199093 |
ctgcaaaggaagagacatgtcacaagctttgacatgaatgctgttgttgttgagtttaatattatttttataatca |
11199018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 11199396 - 11199225
Alignment:
| Q |
72 |
ttaaagtgatttatgtttgagtatattcatctaaggctaaaccttaaaattctagttcaaaacatgtaaaatcaactctacacctttaaaatcaatctgt |
171 |
Q |
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| T |
11199396 |
ttaaagtgatttatgtttcagtatattcatctaaggctaaaccttaaaattctagttccaaacatgtaaaatcaactccacacctttaaaatcaatctgt |
11199297 |
T |
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| Q |
172 |
cacctccaaatgtttcagctgaagccaaatcaaaacagttttcaacaaatcatggatcaaagatcacaaccc |
243 |
Q |
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| T |
11199296 |
cacctccaaatgtttcagctgaagccaagtcaaaacagttttcaacaaatcatggatcaaagatcacaaccc |
11199225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 11198954 - 11198907
Alignment:
| Q |
511 |
atcaaactgtttagaaacttgctccttctctctaactccttctctgct |
558 |
Q |
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| T |
11198954 |
atcaaactgtttagaaacttgctccttctctctaactccttctctgct |
11198907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 11199477 - 11199430
Alignment:
| Q |
19 |
atctatgtgtctgattctccaataacaaaaattgattttgaatgaact |
66 |
Q |
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| T |
11199477 |
atctatgtgtcagattctccaataacaaaaattgattttgaatgaact |
11199430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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