View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_50 (Length: 209)
Name: NF2602_low_50
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34787852 - 34787652
Alignment:
| Q |
1 |
ttaataaacttattcttcatctcaacttgagcatacttcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787852 |
ttaataaacttattcttcatctcaacttgagcatacttcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcac |
34787753 |
T |
|
| Q |
101 |
gtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcctttcattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34787752 |
gtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcctttcgttt |
34787653 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
34787652 |
c |
34787652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2293345 - 2293545
Alignment:
| Q |
1 |
ttaataaacttattcttcatctcaacttgagcatacttcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293345 |
ttaataaacttattcttcatctcaacttcagcatacttcaaccacaaagtatgattcttataatcaacttccaatgctcgttcccaaaccgaacgtgcac |
2293444 |
T |
|
| Q |
101 |
gtgtaaaatccttctgcgactcttcccactgtgcatacttaatccaaacactaacattccacctcactcgccgaattaaatcctcgaattcctttcattt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||| ||| |
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| T |
2293445 |
gtgtaaaatctttctgcgactcttcccactgtgcatacttaatccaaacactgacattccaccgaactctccggattaaatcctcgaattcctttctttt |
2293544 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
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| |
|
|
| T |
2293545 |
c |
2293545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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