View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_6 (Length: 519)
Name: NF2602_low_6
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 41885854 - 41885432
Alignment:
| Q |
1 |
gccggtctgataatggcctgtagtcttaagcaaatcccacaggaaaaagtatacaattcttgcttagttaagcatgatattgagagtgaacattagagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885854 |
gccggtctgataatggcctgtagtcttaagcaaatcccacaggaaaaagtatacaattcttgcttagttaagcatgatattgagagtgaacattagagca |
41885755 |
T |
|
| Q |
101 |
tattgatgaaacaagggattccagtacagtgggtactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataagattatgaggtggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41885754 |
tattgatgaaacaagggattccagtacagtggatactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataaaattatgaggtggaac |
41885655 |
T |
|
| Q |
201 |
atttggggtttgaactaatttaatttgacaagaggttttaatgttgttgaagtagagtggttaagtctagggtattaagagctgaaataattgtgttgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41885654 |
atttggggtttgaactaatttaatttgacaagaggttttaatgttgttgaagtagagtggttaagtctagggtattaagagctgaaataattgtgttgcc |
41885555 |
T |
|
| Q |
301 |
gtggccaagaatactcatcactttctcgaaatctttggaagtattgacatc-gtggtggtcatgtgaaaaagagggattgc-tgaagtggatgatgattg |
398 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41885554 |
gtggccaaaaatactcatcactttctcgaaatctttgaaagtattgacatcggtggtggtcatgtgaaaaagagggattgcatgaagtggatgatgattg |
41885455 |
T |
|
| Q |
399 |
acgtagaaagttagagatagaga |
421 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
41885454 |
acgtagaaagttagagagagaga |
41885432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 41885382 - 41885291
Alignment:
| Q |
411 |
agagatagagaaaatgaccttagggcttaggattatggtaaggaattcttcttctggtagagaaggaggaagaagaagaggtgatgtagttgatg |
505 |
Q |
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| T |
41885382 |
agagagagagagaatgaccttagggcttaggattatggtaaggaattc---ttctggtagagaaggaggaggaagaagaggtgatgtagttgatg |
41885291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 38606068 - 38606125
Alignment:
| Q |
181 |
ataagattatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt |
238 |
Q |
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||||| || ||||||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
38606068 |
ataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggttt |
38606125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 40181588 - 40181645
Alignment:
| Q |
181 |
ataagattatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt |
238 |
Q |
| |
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|||||||| ||||||||||| | | |||||| | |||||||| ||||||||||||||| |
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| T |
40181588 |
ataagattctgaggtggaacttctagggtttcagctaatttagtttgacaagaggttt |
40181645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38605890 - 38605957
Alignment:
| Q |
1 |
gccggtctgataatggcctgtagtcttaagcaaatcccacaggaaaaagtatacaattcttgcttagtt |
69 |
Q |
| |
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|||||| ||||||||||| || |||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
38605890 |
gccggtttgataatggccaatattcttaagcaaatcccaca-gaaaaagtatgtcattcttccttagtt |
38605957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 44459430 - 44459281
Alignment:
| Q |
88 |
gaacattagagcatattgatgaaacaagggattccagtacagtgggtactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataagat |
187 |
Q |
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|
||||| ||||||||||||||||||||||||||||||| |||| ||||| | | ||||| ||| || ||||||||| | | ||| ||||| ||||||| |
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| T |
44459430 |
gaacagtagagcatattgatgaaacaagggattccagaacag-gggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagat |
44459332 |
T |
|
| Q |
188 |
tatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt |
238 |
Q |
| |
|
|||||||| |||| ||||||| || ||| |||||| ||||||||||||||| |
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| T |
44459331 |
tatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggttt |
44459281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 44466963 - 44466814
Alignment:
| Q |
88 |
gaacattagagcatattgatgaaacaagggattccagtacagtgggtactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataagat |
187 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| ||||| | | ||||| ||| || ||||||||| | | ||| ||||| ||||||| |
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| T |
44466963 |
gaacagtagagcatattgatgaaacaagggattccagaacag-gggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagat |
44466865 |
T |
|
| Q |
188 |
tatgaggtggaacatttggggtttgaactaatttaatttgacaagaggttt |
238 |
Q |
| |
|
|||||||| |||| ||||||| || ||| |||||| ||||||||||||||| |
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| T |
44466864 |
tatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggttt |
44466814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 46358991 - 46358852
Alignment:
| Q |
98 |
gcatattgatgaaacaagggattccagtacagtgggtactaacgaggtacttctttttcttccaagcacatcttacaaagtgaataagattatgaggtgg |
197 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||| | | ||||| ||| || ||||||||| | | ||| ||||| ||||||||||||||| | |
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| T |
46358991 |
gcatatttctgaaacaagggattccagaacag-gggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttg |
46358893 |
T |
|
| Q |
198 |
aacatttggggtttgaactaatttaatttgacaagaggttt |
238 |
Q |
| |
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||| ||||||| || ||| |||||| ||||||||||||||| |
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| T |
46358892 |
aacctttggggcttcaacaaatttagtttgacaagaggttt |
46358852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 410290 - 410254
Alignment:
| Q |
244 |
ttgttgaagtagagtggttaagtctagggtattaaga |
280 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |
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|
| T |
410290 |
ttgttgaagtagagtggttaagtcaagggcattaaga |
410254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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