View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2602_low_9 (Length: 485)
Name: NF2602_low_9
Description: NF2602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2602_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 27838138 - 27837686
Alignment:
| Q |
16 |
attggataactacatggtacgtgtaatgtgacaacaggataagtttatacaataattgagtcgtgtcttccatgtcttgtttcaatgaatagccacgaga |
115 |
Q |
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| T |
27838138 |
attggataactacatggtacgtgtaatgtgacaaccggataagctaatacaataattgagtcgtgtcttccatgtcttgtttcaatgaatagccacgaga |
27838039 |
T |
|
| Q |
116 |
ttctcctcatcccacaaacataaagcaattaattaataaaatgatgataaggattttatattatatagtttcaaggata--tataaaaggcatgcgttgc |
213 |
Q |
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| T |
27838038 |
ttctcctcatcccacaaacataaagcaattaattaataaaatgatgataaggattttatattatatagtttcaaggatatatataaaaggcatgcgttgc |
27837939 |
T |
|
| Q |
214 |
tattcaaagatagtttgtattttgtacaacttaattttccaatcagcattcaagaagagatggtgtggccaattcgtaagttatacttaattttcagttt |
313 |
Q |
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| T |
27837938 |
tattcaaagatagtttgtattttgtacaacttaattttccaatcagcattcaagaagtgatggtgtggccaattcgtaagttatacttaattttcagttt |
27837839 |
T |
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| Q |
314 |
gannnnnnnaacctttaatttttgtaaggtcataaaaataataattgaatttaatcactagctaatcaaattctgctttttagggtccagaattattagt |
413 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27837838 |
gattttttt-acctttaatttttgtaaggtcataaaaataataattgaatttaatcactagctaatcaaattctgctttttagggtccagaattattagt |
27837740 |
T |
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| Q |
414 |
tcagttctccgatcaaaggcacctttagtggcttcatacgtccatggagactct |
467 |
Q |
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| T |
27837739 |
tcagttctccgatcaaaggcacctttagtggcttcatacgtccatggagactct |
27837686 |
T |
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