View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2603_high_16 (Length: 280)

Name: NF2603_high_16
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2603_high_16
NF2603_high_16
[»] chr6 (3 HSPs)
chr6 (133-220)||(35043112-35043199)
chr6 (65-131)||(35043225-35043291)
chr6 (96-131)||(35042800-35042835)
[»] chr4 (3 HSPs)
chr4 (29-69)||(29101906-29101946)
chr4 (71-127)||(50847309-50847365)
chr4 (29-69)||(52413657-52413697)
[»] chr2 (2 HSPs)
chr2 (29-67)||(36237617-36237655)
chr2 (29-65)||(8541737-8541773)
[»] chr5 (2 HSPs)
chr5 (29-66)||(23995293-23995330)
chr5 (27-67)||(234684-234724)
[»] scaffold1862 (1 HSPs)
scaffold1862 (29-69)||(67-107)
[»] chr1 (2 HSPs)
chr1 (29-69)||(23621648-23621688)
chr1 (29-69)||(23738401-23738441)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 35043199 - 35043112
Alignment:
Q  133 aaaatcatttatcgtttcttgctatcctttaattttgattctttagaaacattattaggtgtaacttatgcattcataatgcttataa 220  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35043199 aaaatcatttatcgtttcttgctatcctttaattttcattatttagaaacattattaggtgtaacttatgcattcataatgcttataa 35043112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 35043291 - 35043225
Alignment:
Q  65 tgtaattctttgatccaatggctcctattatcccaacaaaataaaattattaaaggatcacacctga 131  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  35043291 tgtaattctttgatccaattactcctattatcccaacaaaataaaattattgaaggatcacacctga 35043225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 35042800 - 35042835
Alignment:
Q  96 cccaacaaaataaaattattaaaggatcacacctga 131  Q
    |||||||||||||||||||| |||||||||||||||    
T  35042800 cccaacaaaataaaattattgaaggatcacacctga 35042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 29101946 - 29101906
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgtaa 69  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  29101946 tatatatatatataggcaggatccgttgacatcaggtgtaa 29101906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 50847309 - 50847365
Alignment:
Q  71 tctttgatccaatggctcctattatcccaacaaaataaaattattaaaggatcacac 127  Q
    ||||| |||||| ||||| ||||||||||||||||| ||| |||| |||||||||||    
T  50847309 tctttaatccaaaggctcgtattatcccaacaaaatgaaaatattgaaggatcacac 50847365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 52413697 - 52413657
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgtaa 69  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  52413697 tatatatatatagagacaggatccgttgacaccaggtgtaa 52413657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 36237617 - 36237655
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgt 67  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  36237617 tatatatatagagagtcaggatccgttgacaccaggtgt 36237655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 8541737 - 8541773
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggt 65  Q
    |||||||||| |||| |||||||||||||||||||||    
T  8541737 tatatatatatagagtcaggatccgttgacatcaggt 8541773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 23995293 - 23995330
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtg 66  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  23995293 tatatatatatagagtcaggatccgttgacatcaggtg 23995330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 234684 - 234724
Alignment:
Q  27 tttatatatatagagaggcaggatccgttgacatcaggtgt 67  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  234684 tttatatatatatagagtcaggatccgttgacaccaggtgt 234724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1862 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 107 - 67
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgtaa 69  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  107 tatatatatatagagacaggatccgttgacaccaggtgtaa 67  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 23621648 - 23621688
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgtaa 69  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  23621648 tatatatatatagaggtaggatccgttgacaccaggtgtaa 23621688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 23738401 - 23738441
Alignment:
Q  29 tatatatatagagaggcaggatccgttgacatcaggtgtaa 69  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  23738401 tatatatatagagaggtaggatctgttgacaccaggtgtaa 23738441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University