View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_high_4 (Length: 583)
Name: NF2603_high_4
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 196 - 537
Target Start/End: Original strand, 4283151 - 4283489
Alignment:
| Q |
196 |
taaatgttgtagttaacataattgatgcagtagaggttatcactcatgtgatatgtgaaggtgaaaattctattgatattaattataattatgtttaagt |
295 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283151 |
taaatgttgtgcttaacataattgatgcagtagagattatcactcatgtgatgtgtgaaggtgaaaattctattgatattaattataattatgtttaagt |
4283250 |
T |
|
| Q |
296 |
tctaaaatttcaatttgaaaa-ataagaagtagaattaaactatgttgtagcctgacggtaaaagacattttgaaacccacaatttgcttatatgaagag |
394 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4283251 |
tctaaaatttcaatttgaaaaaataagaagaagaattaaactatgttgtagcctgacggtaaaaggcattttgaaacccacaatttgcttatatgaagag |
4283350 |
T |
|
| Q |
395 |
ctatagctatgaaatcaaactaaaattatatatgagttaagtgaatgtagaataggcaataataagtaaaaaaacaacaaagattgatnnnnnnnnctag |
494 |
Q |
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| T |
4283351 |
ctataactatgaaatcaaactaaaattatagatgagttaagtgaatgtagaataggcaataataa-taaaataacaacaaagattgat---aaaaactag |
4283446 |
T |
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| Q |
495 |
caaagctatataatttcaaaaacaagcattaaaaagtaaaatt |
537 |
Q |
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| T |
4283447 |
caaagttatataattctaaaaacaaacattaaaaagtaaaatt |
4283489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 192 - 524
Target Start/End: Original strand, 4240523 - 4240855
Alignment:
| Q |
192 |
ataataaatgttgtagttaacataattgatgcagtagaggttatcactcatgtgatatgtgaaggtgaaaattctattgatattaattataattatgttt |
291 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |
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| T |
4240523 |
ataataaatgttgtgcttaacataattgatgcagtagagattatcactcatgtgatatgtgaatgtgaaaaatatattgatattaattataattatgttt |
4240622 |
T |
|
| Q |
292 |
aagttctaaaatttcaatttgaaaa-ataagaagtagaattaaactatgttgtagcctgacggtaaaagacattttgaaacccacaatttgcttatatga |
390 |
Q |
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|||||||||||||| |||||||||| |||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4240623 |
aagttctaaaatttaaatttgaaaaaataagaagaagaattaaacaatgttgtagcatgacggtaaaaggcattttgaaacccacaatttgcttatatga |
4240722 |
T |
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| Q |
391 |
agagctatagctatgaaatcaaactaaaattatatatgagttaagtgaatgtagaataggcaataataagt--aaaaaaacaacaaagattgatnnnnnn |
488 |
Q |
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|||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
4240723 |
agagttgtagctatgaaatgaaactaaaattatagatgagttaagtgaatgtagaataggcaataataagtaaaaaaaaaaaacaaagattgat---aaa |
4240819 |
T |
|
| Q |
489 |
nnctagcaaagctatataatttcaaaaacaagcatt |
524 |
Q |
| |
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|||||||| |||||||||| ||||||||| |||| |
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| T |
4240820 |
aactagcaaaactatataattccaaaaacaaacatt |
4240855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 4241971 - 4242010
Alignment:
| Q |
533 |
aaatttttaacatggtccgcactacttttcttgtgccttt |
572 |
Q |
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| T |
4241971 |
aaatttttaacatggtctgcactacttttcttgtgccttt |
4242010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 533 - 572
Target Start/End: Original strand, 4285039 - 4285078
Alignment:
| Q |
533 |
aaatttttaacatggtccgcactacttttcttgtgccttt |
572 |
Q |
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| T |
4285039 |
aaatttttaacatggtctgcactacttttcttgtgccttt |
4285078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 53074169 - 53074005
Alignment:
| Q |
25 |
gccgtgaaagctaggaacaccagcgtcattggaaatggcgttttgagctctgaactgcgttttctagattcaatttttattcatccaaacaagacaaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53074169 |
gccgtgaaagctaggaacaccagcgtcattggaaatggcgttttgagctctgaactgcgttttctagattcagtttttattcatccaaacaagacaaaaa |
53074070 |
T |
|
| Q |
125 |
atggggaaaccgcgtttgagaatggaaatggaggtttggctgaaaaaacgtgtggccaaacacac |
189 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53074069 |
atggggaaaccgcgtttgagaatggaaacggaggtttggctgaaaaaacgtgtggccaaacacac |
53074005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 45199295 - 45199138
Alignment:
| Q |
32 |
aagctaggaacaccagcgtcattggaaatggcgttttgagctctgaactgcgttttctagattcaatttttattcatccaaacaagacaaaaaatgggga |
131 |
Q |
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|||||||||| |||||| ||| ||| || ||||||||| || ||||| |||| ||||| ||| |||| |||||||||||||| |||||||||| || |
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| T |
45199295 |
aagctaggaataccagcttcaacagaactgacgttttgagtcctaaactgtgtttcctagaatcagttttcattcatccaaacaaaacaaaaaatgctga |
45199196 |
T |
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| Q |
132 |
aaccgcgtttgagaatggaaatggaggtttggctgaaaaaacgtgtggccaaacacac |
189 |
Q |
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||| ||||||| || | ||| | | ||||||||||||||||||| | ||||||||| |
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| T |
45199195 |
aacaacgtttgacaaagtaaacgcaaatttggctgaaaaaacgtgtagtcaaacacac |
45199138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 22937629 - 22937784
Alignment:
| Q |
32 |
aagctaggaacaccagcgtcattggaaatggcgttttgagctctgaactgcgttttctagattcaatttttattcatccaaacaagacaaaaaatgggga |
131 |
Q |
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|||||||||||| ||| ||| | ||| |||||||||||| || |||| |||| ||| | ||| |||| |||||||||||||||| |||||||| || |
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| T |
22937629 |
aagctaggaaca--agcttcaatagaactggcgttttgagtcctaaactatgtttcctaaaatcagttttcattcatccaaacaagataaaaaatgttga |
22937726 |
T |
|
| Q |
132 |
aaccgcgtttgagaatggaaatggaggtttggctgaaaa-aacgtgtggccaaacaca |
188 |
Q |
| |
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|||| |||||||||| | ||| ||||||||||||||| |||||||||||||||||| |
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| T |
22937727 |
aaccacgtttgagaaagtaaacacaggtttggctgaaaacaacgtgtggccaaacaca |
22937784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 20080157 - 20080200
Alignment:
| Q |
98 |
tttttattcatccaaacaagacaaaaaatggggaaaccgcgttt |
141 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
20080157 |
tttttcttcatccaaacaacacaaaaaatggggaaactgcgttt |
20080200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 1199114 - 1198953
Alignment:
| Q |
32 |
aagctaggaacaccagcgtcattggaaatggcgttttgagctctgaactgcgttttctagattcaatttttattcatccaaacaagac---aaaaaatgg |
128 |
Q |
| |
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|||||||||| |||||| ||| ||| || ||||||||| || |||| |||| ||||| ||| |||| ||||||| |||||||| |||||||| |
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| T |
1199114 |
aagctaggaataccagcttcaacagaactgacgttttgagtcctacactgtgtttcctagaatcagttttcattcatctaaacaagaacaaaaaaaatgc |
1199015 |
T |
|
| Q |
129 |
ggaaaccgcgtttgagaatggaaatggaggtttggctgaaaaaa-cgtgtggccaaacacac |
189 |
Q |
| |
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|||||| |||||||||| | ||| | |||||||| |||||||| ||||||||||||||||| |
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|
| T |
1199014 |
tgaaaccacgtttgagaaagtaaacgcaggtttggttgaaaaaaacgtgtggccaaacacac |
1198953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 2213877 - 2213834
Alignment:
| Q |
98 |
tttttattcatccaaacaagacaaaaaatggggaaaccgcgttt |
141 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
2213877 |
tttttcttcatccaaacaacacaaaaaatggggaaactgcgttt |
2213834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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