View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_high_5 (Length: 525)
Name: NF2603_high_5
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 46677456 - 46676958
Alignment:
| Q |
8 |
ggagtagcataggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgttt |
107 |
Q |
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| T |
46677456 |
ggagcagcagaggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgttt |
46677357 |
T |
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| Q |
108 |
ttatgtcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgta |
207 |
Q |
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| T |
46677356 |
ttatgtcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgta |
46677257 |
T |
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| Q |
208 |
ttttggtcctgctaatgatttgaacaatttccccaccgatcccaacatgtgcctgcataagttcaaccattaatacaaattatatttatttatcagatac |
307 |
Q |
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| T |
46677256 |
ttttggtcctgctaatgatttgaacaatttccccaccgatcccaacatgtgcctgcataagttcaaccattaatacaaattatatatatttatcagatac |
46677157 |
T |
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| Q |
308 |
ataagctattcaatgaacttaatgcaccagaataagtgcaattggtttgaatatgtatacttacttctgttgtgggaaaatctttggacaatgttccaag |
407 |
Q |
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| T |
46677156 |
ataagttattcaatgaacttaatgcaccagaataagtgcaattggtttgaatatgtatacgtacttctgttgtgggaaaatctttggacaatgttccaag |
46677057 |
T |
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| Q |
408 |
taaaagggcttgatatccttggcagcaaaaagtggacgttgtttatcatttggagcacttaacatggcagttacaagaccacctgtgctagttcctgta |
506 |
Q |
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| T |
46677056 |
taaaagggcttgatatccttggcagcaaaaagtggacgttgtttatcatttggagcacttaacatggcagttacaagaccacctgtgctagttcctgta |
46676958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 46681428 - 46681168
Alignment:
| Q |
13 |
agcataggtactgatgcatatgtccgagagtcgagcatccatgcaaggggcgttcttgatcttataagatgagaaaatgattggttgcgatgtttttatg |
112 |
Q |
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| T |
46681428 |
agcagaggtgctgatacatatgtctgagagtcgagcatccatgcatggagttttcttgatcttataagatgagaaaataattggttgcattgtttttatg |
46681329 |
T |
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| Q |
113 |
tcaaacgtggggatcacaatatttgtgagtgtttcatgtacacgaatttccccaagcttctccctaaccacactgtgtaggtaattcccatcgtattttg |
212 |
Q |
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| T |
46681328 |
tcaaatgtgggaatcacaatattggtcagcgtctcgtgcacacgaatttcccccaacttctccctcaccacttcgtgaaggtatttcccatcatattttg |
46681229 |
T |
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| Q |
213 |
gtcctgctaatgatttgaacaatttccccaccgatcccaacatgtgcctgcataagttcaa |
273 |
Q |
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| T |
46681228 |
gtcctaccaatgatctgaacaattttccaaatgatccaaacaagtccctgcatgagttcaa |
46681168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 369 - 506
Target Start/End: Complemental strand, 46681077 - 46680940
Alignment:
| Q |
369 |
tacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacgttgtttatcatttggagcactta |
468 |
Q |
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| T |
46681077 |
tacttttgttgtgggaagatctttggagaatgctccaagtaaaagggcttgatatccttggcagcaaaaagtgggcgctttttatcattcggagcgctta |
46680978 |
T |
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| Q |
469 |
acatggcagttacaagaccacctgtgctagttcctgta |
506 |
Q |
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| T |
46680977 |
acatggcagttacaagaccacctgtgcttgttcctgta |
46680940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 504
Target Start/End: Original strand, 6090991 - 6091120
Alignment:
| Q |
375 |
tgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatatccttggcagcaaaaagtggacg-ttgtttatcatttggagcacttaacatg |
473 |
Q |
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|||||||||||||| || || |||||||| | |||||||||||||||||| |||||||||||||||||||| |||||| | || |||||| || |||| |
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| T |
6090991 |
tgttgtgggaaaattttagggcaatgttcaaggtaaaagggcttgatatctttggcagcaaaaagtggacgattgttt-ttatcaggagcagctagcatg |
6091089 |
T |
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| Q |
474 |
gcagttacaagaccacctgtgctagttcctg |
504 |
Q |
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| T |
6091090 |
gcagtcacaagacctcctgtacttgttcctg |
6091120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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