View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_1 (Length: 756)
Name: NF2603_low_1
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 18 - 749
Target Start/End: Complemental strand, 43280187 - 43279451
Alignment:
| Q |
18 |
aaaacaatgtcatat--taatctagcttatgaagnnnnnnnaatattaatcttgatcgtcctcttctgattttagaaacttctattccttcataacattt |
115 |
Q |
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| T |
43280187 |
aaaacaatgtcatatattaatctagcttatgaagtttttttaatattaatcttgatcgtcctcttctgattttagaaacttctattccttcataacattt |
43280088 |
T |
|
| Q |
116 |
cattatcattacttggatgttttatttgtctttgatgttccttctaagaaatacgtcatttcctataccaaaaacttttgtcccggaatgtaattcaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43280087 |
cattatcattacttggatgttttatttgtctttgatgttccttctaagaaatacgtcattacctataccaaaaacttttgtcccggaatgtaattcaaag |
43279988 |
T |
|
| Q |
216 |
tatacaaatccaactcataannnnnnnncattatgcaatgaaacttttgtaacaatta---cttaattcctagctactagctagtataattgttttattt |
312 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43279987 |
tatacaaatccaactcataattttttttcattatgcaatgaaacttttgtgacaattattacttaattcctagctactagctagtataattgttttattt |
43279888 |
T |
|
| Q |
313 |
atagaagattccaacacacacagttacgagcacacatggaagagaaaaacaatagcaactatagtacaaactgtttagttgggagttgaaacaatcacta |
412 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43279887 |
atagaagattccaacacacacagttacaagcacacatggaagagaaaaacaatagcaactatagtacaaactgtttagttggaagttgaaacaatcacta |
43279788 |
T |
|
| Q |
413 |
gattgttcaaagtataggagaatacgaggaccccatcccattgtcctaatttaactatacaccaaaatgtatcacgtctatttcataactattgatattt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43279787 |
gattgttcaaagtataggagaatacgaggaccccatcccattgtcctaatttaactatacaccaaaatgtatcacgtctatttcataactattgatattt |
43279688 |
T |
|
| Q |
513 |
tgttaagttgactgggtggaaaatatcaaccgaaatattcacacagacaaaggaagaattttggatttaaactcgggtacaacaaaaaatgaacaaagta |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43279687 |
tgttaagttgactgggtggaaaatatcaaccgaaatattcacacagacaaaggaagaattttggatttaaactcgggtacaacaaaaaatgaacaaagta |
43279588 |
T |
|
| Q |
613 |
ttgattctcttagctatcagttcaaagttgttgatatatttacaagttcttgtcaccaaagctcttttttcatttcagttccatgctgcatggggttgat |
712 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43279587 |
ttgcttctcttagctatcagttcaaagttgttgatatatttacaagttcttgtcaccaaagctcttttttcatttcagttccatgctgcatggggttgat |
43279488 |
T |
|
| Q |
713 |
atatatttaccaacctcatctcctaggagtattatct |
749 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
43279487 |
atatatttaccaacctcatctcctaggagtattatct |
43279451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 32725814 - 32725966
Alignment:
| Q |
123 |
attacttggatgttttatttgtctttgatgttccttctaagaaatacgtcatttcctataccaaaaacttttgtcccggaatgtaattcaaagtatacaa |
222 |
Q |
| |
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||||||||| ||||||||||||||| |||| || |||||| || |||||||| ||| |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
32725814 |
attacttgggtgttttatttgtcttcaatgtaccacctaagatattcgtcattttctac-ccaaaaacttttatcccgaaatgtaattcaaagtatacaa |
32725912 |
T |
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| Q |
223 |
atccaactcataannnnnnnncattatgcaatgaaacttttgtaacaattactt |
276 |
Q |
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|||||||| | ||||||| ||||||||| |||| |||||||||| |
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| T |
32725913 |
tctcaactcatgaaaaaaattcattatgtaatgaaactgttgtgacaattactt |
32725966 |
T |
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