View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_11 (Length: 405)
Name: NF2603_low_11
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 64 - 356
Target Start/End: Original strand, 2820903 - 2821195
Alignment:
| Q |
64 |
gtcttgcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcagttttatatcgacgttttattttatatgtt |
163 |
Q |
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| T |
2820903 |
gtcttgcaagcttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcagttttatatcaacgttttattttatatgtt |
2821002 |
T |
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| Q |
164 |
tcgttttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttg |
263 |
Q |
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| T |
2821003 |
tcattttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagcaatttg |
2821102 |
T |
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| Q |
264 |
gttctccacgatacagctcaaagtaaaatatttccactcatcctgcaataatcagcaaaaagtggatcccgttcactgagcgactctggcttc |
356 |
Q |
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| T |
2821103 |
gttctccacgatacagctcaaagtaaaatatttcctctcatcctgcaataatcagcaaaaagtggatcccattcactgagcgactgtggcttc |
2821195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 2809624 - 2809828
Alignment:
| Q |
74 |
cttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataa--------------agcattcagttttatatcgacgttttattttata |
159 |
Q |
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| T |
2809624 |
cttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcttgtactagcattcagttttataacgacgtttcatttaatg |
2809723 |
T |
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| Q |
160 |
tgtttcgttttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaa |
259 |
Q |
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| T |
2809724 |
tgtttcattttgttttgaaaaagatttaatgtgtttaattaagctga-----gtatgagataactgacttgattgttttttgtgtcaatgcggacagaaa |
2809818 |
T |
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| Q |
260 |
tttggttctc |
269 |
Q |
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|||||||||| |
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| T |
2809819 |
tttggttctc |
2809828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 2761632 - 2761705
Alignment:
| Q |
213 |
tatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag |
286 |
Q |
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| T |
2761632 |
tatgagataactgacttgattttttcttgtgtcggtgtggccagaaatttggttctccataatacagctcaaag |
2761705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 2799725 - 2799766
Alignment:
| Q |
82 |
tatgaaggtacctttcctctgatcatgcaatgcttctcttat |
123 |
Q |
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| T |
2799725 |
tatgaaggtacctttcctctgatcatgcaatgcttctcttat |
2799766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 2793422 - 2793475
Alignment:
| Q |
193 |
tttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtca |
246 |
Q |
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| T |
2793422 |
tttaattaagttgacaattgtatgagataactgactaaattgtttctcgtgtca |
2793475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2761565 - 2761614
Alignment:
| Q |
69 |
gcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttct |
118 |
Q |
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|||| |||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
2761565 |
gcaagcttcaaaatatgaaggtacctttcatccgatcatgtaatgcttct |
2761614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 2836396 - 2836337
Alignment:
| Q |
64 |
gtcttgcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttat |
123 |
Q |
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| T |
2836396 |
gtctagcaagcttcaaaacaagaaggtacctctcctctgatcgcgcaatgcttctcttat |
2836337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 2773460 - 2773530
Alignment:
| Q |
194 |
ttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttgg |
264 |
Q |
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| T |
2773460 |
ttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaatgtggacagcaatttgg |
2773530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 2771531 - 2771605
Alignment:
| Q |
172 |
ttttgaaaaagatttagtgtgtttaattaagtt----gacaattctatgagataactgacttgattgtttcttgt |
242 |
Q |
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||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| | |||||||||||| |
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| T |
2771531 |
ttttgaaaaagatttgacgtgtttaattaagttgaccgacaattgtatgagataactgagtaaattgtttcttgt |
2771605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 2792671 - 2792719
Alignment:
| Q |
75 |
ttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttat |
123 |
Q |
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| T |
2792671 |
ttcaaaagatgaaggtgcctttcctctgatcattcaacacttctcttat |
2792719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 11115092 - 11114997
Alignment:
| Q |
191 |
tgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag |
286 |
Q |
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||||||||| ||||||||||| |||||||||||||||| |||||||||||| | ||| |||||||| || ||||||| | ||||| |||||||| |
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| T |
11115092 |
tgtttaatttagttgacaattgtatgagataactgactcaattgtttcttgtataaatttggacagaatttgggttctcaatgataccgctcaaag |
11114997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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