View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_13 (Length: 382)
Name: NF2603_low_13
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 146 - 378
Target Start/End: Original strand, 24066276 - 24066508
Alignment:
| Q |
146 |
atagataataaattatgtgagttgggtctcaatcaaggtaagggaaagtctcgagtttcatatagtgcttatagagatacttacatactatctaccaatc |
245 |
Q |
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| T |
24066276 |
atagataataaattatgtgagttgggtctcaatcaaggtaagggaaagtctcgagtttcatatagtgcttatagagatacttacatactatctaccaatt |
24066375 |
T |
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| Q |
246 |
aggtcctgctatcggtattgagatttgaacctagatcaatttaattcaactttgaatcaggtaagcttacagaggtacttacatatagtgcatataatgc |
345 |
Q |
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|| ||||||||||||| | || |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24066376 |
agatcctgctatcggtgtcgaaatttgaacctaggtccatttaatttaactttgaatcaggtaagcttacagaggtacttacatatagtgcatataatgc |
24066475 |
T |
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| Q |
346 |
attgcacgggtcgaaagcctagtattatctacc |
378 |
Q |
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|| |||||||||||||||||||| ||||||||| |
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| T |
24066476 |
atcgcacgggtcgaaagcctagtgttatctacc |
24066508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 24066054 - 24066260
Alignment:
| Q |
146 |
atagataataaattatgtgagttgggtctcaatcaaggtaagggaaagtctcgagtttcatatagtgcttatagagatacttacatactatctaccaatc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24066054 |
atagataataaattatgtgagttgggtctcaatcaaggtaagggaaagtctcgagtttcatatagtgcttatagagatacttacatactatctaccaatc |
24066153 |
T |
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| Q |
246 |
aggtcctgctatcggtattgagatttgaacctagatcaatttaattcaactttgaatcaggtaagcttacagaggtacttacatatagtgcatataatgc |
345 |
Q |
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| T |
24066154 |
aggtcctgctatcggtttcgagatttgaacctaggtctatttaattcaactttgaattaggtaagcttacagaggtacttacatatagtgcatataatgc |
24066253 |
T |
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| Q |
346 |
attgcac |
352 |
Q |
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|| |||| |
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| T |
24066254 |
atcgcac |
24066260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24065923 - 24065960
Alignment:
| Q |
16 |
caaatatcaacccttctagattagaatagttctatagt |
53 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
24065923 |
caaatatcaacccttctagattagaatagttccatagt |
24065960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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