View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_14 (Length: 381)
Name: NF2603_low_14
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 41728398 - 41728289
Alignment:
| Q |
254 |
gctgaaaatgaaagacctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacaccgtcgtcattaaggaagcatttgaatatt |
353 |
Q |
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| T |
41728398 |
gctgaaaatgaaagacctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacgccgtcgtcattaaggaagcatttgaatatt |
41728299 |
T |
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| Q |
354 |
tctattatat |
363 |
Q |
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| T |
41728298 |
tctattatat |
41728289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 41728626 - 41728509
Alignment:
| Q |
19 |
agaagggtcattgctacagagaagaaagaaaaataaaataccttttagtgaggagaagaagatcaatggtttgtggtgaagaccgaagaagaatcaggat |
118 |
Q |
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| T |
41728626 |
agaagggtcggtgctacagagaagaaagaaaaataaaataccttttagtgaggagaagaagatcaatggtttgtggtgaagactgaagaagaatcaggat |
41728527 |
T |
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| Q |
119 |
caggaattcgaataccca |
136 |
Q |
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| T |
41728526 |
caggaattcgaagaccca |
41728509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 1310493 - 1310412
Alignment:
| Q |
268 |
acctattagcaagggagaagagaagagtggaatgagaagcttcgatgtctaaaacaccgtcgtcattaaggaagcatttgaa |
349 |
Q |
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| T |
1310493 |
acctattagctacggagaagagaacagtggaatcagaagcttcaatatccaaaacgtcgtcgtcataaaagaagcatttgaa |
1310412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 1310709 - 1310665
Alignment:
| Q |
55 |
aataccttttagtgaggagaagaagatcaatggtttgtggtgaag |
99 |
Q |
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| T |
1310709 |
aataccgtttagtaaggagaacaagatcaatggtttgtggtgaag |
1310665 |
T |
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