View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2603_low_15 (Length: 360)

Name: NF2603_low_15
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2603_low_15
NF2603_low_15
[»] chr3 (3 HSPs)
chr3 (1-353)||(2821523-2821875)
chr3 (213-298)||(48196786-48196871)
chr3 (240-330)||(46574483-46574573)
[»] chr1 (2 HSPs)
chr1 (213-298)||(23539739-23539823)
chr1 (168-297)||(40569674-40569804)
[»] chr5 (2 HSPs)
chr5 (213-298)||(16397967-16398052)
chr5 (59-173)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (253-331)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (69-173)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (171-268)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (132-209)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 2821523 - 2821875
Alignment:
Q  1 cccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttatgatatctttaatattgtattagagtatcggaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2821523 cccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttataatatctttaatattgtattagagtatcggaag 2821622  T
Q  101 ttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatt 200  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821623 ttatttcctgcaattagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatt 2821722  T
Q  201 tgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821723 tgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcat 2821822  T
Q  301 tattttctttaaaattccacaacttcaacaaaggtcttgtatagtttcatctc 353  Q
    | || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2821823 tcttatctttaaaatcccacaacttcaacaaaggtcttgtatagtttcatctc 2821875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  213 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 298  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  240 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 330  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  213 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 298  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  168 tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 267  Q
    |||| |||||||||||||||||| | |||| |  || |||| || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  268 ataacatt-caaggttcttattattttctct 297  Q
    |||||||| | ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  213 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 298  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 7379937 - 7380048
Alignment:
Q  59 atatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttat 158  Q
    ||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||   ||||||||| || |||   ||||||||| || |||||| | |||||    
T  7379937 atatcttataataactttaatattatattagaatatcttaagttatttcctagaattagtttacaatctt---agagtatctattgggattaaattttat 7380033  T
Q  159 atatcttaatattat 173  Q
    ||  |||| ||||||    
T  7380034 attacttattattat 7380048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  253 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 331  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
Q  69 atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat 168  Q
    |||||||  ||||| ||||| ||||||  ||||||| || | |||||||||||||| ||||   ||||||||||||||||| || |||||||  |||| |    
T  15999333 atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt 15999237  T
Q  169 attat 173  Q
    |||||    
T  15999236 attat 15999232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 32103 - 32200
Alignment:
Q  171 tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa 268  Q
    |||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || ||  ||| ||||||| |||| ||||||||| ||||||    
T  32103 tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 42286593 - 42286518
Alignment:
Q  132 agagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatcc 209  Q
    ||||||||||||||||| |||||||| || | ||| |||| ||||||| |||||||||||| |||| ||||| |||||    
T  42286593 agagtatctcttaggatcagagttta-at-tgttattattttgatttggtcttgatttaagattgagtttgtgtatcc 42286518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University