View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_16 (Length: 329)
Name: NF2603_low_16
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 21181972 - 21181653
Alignment:
| Q |
1 |
ggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtgacccttgtcactgtctcaatggt |
100 |
Q |
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| T |
21181972 |
ggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgcgacccttgtcactgtctcaatggt |
21181873 |
T |
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| Q |
101 |
tttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcagcagtaaaaatagcatagatg |
200 |
Q |
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| T |
21181872 |
tttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcaacagtaaaaatagcatagatg |
21181773 |
T |
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| Q |
201 |
gattcaaacgtttcagttcagttgaattacctccatacgaagtgaccctacagttcgatgcgctctcccagtgtaacaacacttgttacaccaattgttc |
300 |
Q |
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| T |
21181772 |
gattcaaacgtttcagtttagttgaattacctccatatgaagtgaacctacagttcgatgcgctctcacagtgtaacaacacttgttacaccaattgttc |
21181673 |
T |
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| Q |
301 |
ttgtgttgcttatgcctatg |
320 |
Q |
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| T |
21181672 |
ttgtgttgcttatgcttatg |
21181653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 23178026 - 23178092
Alignment:
| Q |
29 |
acaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtgacccttgtcactgtctca |
95 |
Q |
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| T |
23178026 |
acaaacaattcatgtggatttttttccatttgtaatccgcaaactcctgacccttgtcaatgtctca |
23178092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 23187210 - 23187294
Alignment:
| Q |
81 |
cttgtcactgtctcaatggttttgaaccgtttgatgctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaa |
165 |
Q |
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| T |
23187210 |
cttgtcaatgtctctacggtttcgaaaagtatgattccgattcttggagtaagggggataggtcagcgggatgtgtcagaataaa |
23187294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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