View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2603_low_17 (Length: 312)

Name: NF2603_low_17
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2603_low_17
NF2603_low_17
[»] chr6 (10 HSPs)
chr6 (115-304)||(13072612-13072801)
chr6 (115-304)||(13076816-13077005)
chr6 (1-55)||(13072498-13072552)
chr6 (1-55)||(13076702-13076756)
chr6 (211-302)||(13065149-13065237)
chr6 (211-302)||(13071903-13071991)
chr6 (211-302)||(13076107-13076195)
chr6 (26-55)||(13064982-13065011)
chr6 (26-55)||(13071736-13071765)
chr6 (26-55)||(13075940-13075969)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 115 - 304
Target Start/End: Original strand, 13072612 - 13072801
Alignment:
Q  115 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072612 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 13072711  T
Q  215 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgttccatctttaccttcttct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13072712 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttct 13072801  T

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Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 115 - 304
Target Start/End: Original strand, 13076816 - 13077005
Alignment:
Q  115 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13076816 ctacatggcattaaatgattgaatgttgtgtatgatatccaaccaaaaactctagggtaccggagtattcacctctttcgaaacggtttcttctagtaca 13076915  T
Q  215 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgttccatctttaccttcttct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13076916 tgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgtttcatctttatcttcttct 13077005  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13072498 - 13072552
Alignment:
Q  1 agtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072498 agtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 13072552  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13076702 - 13076756
Alignment:
Q  1 agtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13076702 agtggagaattctttgctatgttagagttttgtttggtaccggtaccctgtagtc 13076756  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 13065149 - 13065237
Alignment:
Q  211 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgttccatctttaccttctt 302  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||| ||  |||||||||||    
T  13065149 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13065237  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 13071903 - 13071991
Alignment:
Q  211 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgttccatctttaccttctt 302  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||| ||  |||||||||||    
T  13071903 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13071991  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 13076107 - 13076195
Alignment:
Q  211 tacatgaatgtgtctttccacatacttctcttcttctccctttggaatttcattgtcctttttccgtccacttgttccatctttaccttctt 302  Q
    |||||||||||| |||||||| | |||||||||| |   |||||| |||||||||| |||||||| |||| ||||| ||  |||||||||||    
T  13076107 tacatgaatgtgcctttccactttcttctcttctac---ctttgggatttcattgtgctttttccatccagttgtttcacttttaccttctt 13076195  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 13064982 - 13065011
Alignment:
Q  26 agttttgtttggtaccggtaccctgtagtc 55  Q
    ||||||||||||||||||||||||||||||    
T  13064982 agttttgtttggtaccggtaccctgtagtc 13065011  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 13071736 - 13071765
Alignment:
Q  26 agttttgtttggtaccggtaccctgtagtc 55  Q
    ||||||||||||||||||||||||||||||    
T  13071736 agttttgtttggtaccggtaccctgtagtc 13071765  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 13075940 - 13075969
Alignment:
Q  26 agttttgtttggtaccggtaccctgtagtc 55  Q
    ||||||||||||||||||||||||||||||    
T  13075940 agttttgtttggtaccggtaccctgtagtc 13075969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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