View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_18 (Length: 309)
Name: NF2603_low_18
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 4285084 - 4285387
Alignment:
| Q |
1 |
taaacctacaccttctttctcggtaactctctctaaacactgtttcaactcgttttctccatactattcctataactacctaaaaatttggttaaaattc |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
4285084 |
taaacctacaccttctttctcagtaactctctctaaacactgtttcaactcgtttcctccatacgattcctataactacctaaaaatttggttcaaattc |
4285183 |
T |
|
| Q |
101 |
atttcctcgtacatgtcctttgagactcccttaaaatctagttgcaactcgtttccccaatcttcttcatctgcaactaccacaaaaatttagttttatt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
4285184 |
atttcctcgtacatgtcctttgcgactcccttaaaatctagttgcaactcatctccccaatcttcttcatctgcaactgcctcaaaaatttagttttatt |
4285283 |
T |
|
| Q |
201 |
atttccaattcattg---tcttcttcttccttttcatcgaactctcccgtaaaatcaagagaatccgacactttttccaagtttgagcttgattcatatt |
297 |
Q |
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|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4285284 |
atttccaattcatcgtcttcttcttcttccttttcatccaactctcccgtaaaatcaagagaatctgacactttttccaagtttgagcttgattcatatt |
4285383 |
T |
|
| Q |
298 |
cttc |
301 |
Q |
| |
|
|||| |
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|
| T |
4285384 |
cttc |
4285387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 4242016 - 4242319
Alignment:
| Q |
1 |
taaacctacaccttctttctcggtaactctctctaaacactgtttcaactcgttttctccatactattcctataactacctaaaaatttggttaaaattc |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4242016 |
taaacctacgtcttctttctcagtaactccctctaaacactgtttcaactcgttttctccatactattcctataactacctaaaaatttggttcaaattc |
4242115 |
T |
|
| Q |
101 |
atttcctcgtacatgtcctttgagactcccttaaaatctagttgcaactcgtttccccaatcttcttcatctgcaactaccacaaaaatttagttttatt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4242116 |
atttcctcgtacatgtcctttgcgactcccttaaaatattgttgcaactcatttccccaatcttcttcatctgcaactacctcaaaaatttagttttatt |
4242215 |
T |
|
| Q |
201 |
atttccaattcattg---tcttcttcttccttttcatcgaactctcccgtaaaatcaagagaatccgacactttttccaagtttgagcttgattcatatt |
297 |
Q |
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|||| ||||| || | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
4242216 |
attttcaatttatcgtcttcttcttcttccttttcatctaactctcccgtaaaatcaagagaatctgacacttttttcaagtttgagcttgattcatatt |
4242315 |
T |
|
| Q |
298 |
cttc |
301 |
Q |
| |
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|||| |
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|
| T |
4242316 |
cttc |
4242319 |
T |
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