View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_2 (Length: 672)
Name: NF2603_low_2
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 9998500 - 9998041
Alignment:
| Q |
12 |
atgaatttggagtacaaaacatctaaccaaacatgtgttagatgtatgtttggtatcacgatggatatattatatatcagaactacggtgatttgttgtg |
111 |
Q |
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| T |
9998500 |
atgaatttggggtacaaaacatctaaccaaacatgtgttagatgtatgtttggtatcacgatggatatattatatatcagaactacggtgatttgtcgtg |
9998401 |
T |
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| Q |
112 |
attttgcataagctacaacgataagtcatcataattctcacacacttaccgtgatattaaacatagaccaagagtagtgggagtgtgagaatattgatac |
211 |
Q |
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| T |
9998400 |
attttgcataagctacaacgataagtcatcataattctcacacacttaccgtgatatcaaacatagactaagagtagtgggagtgtgagaatattgatac |
9998301 |
T |
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| Q |
212 |
ttatctttaatagatgagtttgacttctgtaggaggtaaaaacttttaaattaatcaatggtgattcagtgatcaagaatgttggctgaattggagcagc |
311 |
Q |
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| T |
9998300 |
ttatctttaatatatgagtttgacttctgtaggaggtaaaaacttttaaattaatcaatggtgattcagtgatcaagaatgttggctgaattggagcagc |
9998201 |
T |
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| Q |
312 |
gttttgtcaagtttggatgttataacatagcaaagagttgctataaaaatattttgtgcttgttctttattttgcccttttcacttataagaagaagtga |
411 |
Q |
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| T |
9998200 |
gttttgtcaagtttggatgttataacatagcaaagagttgctataaaaatattttgtgcttgttctttattttgcccttttcacttataagaagaagtga |
9998101 |
T |
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| Q |
412 |
ttctgctaagataagagagaatgggagttggtgagtttctatttccgttaatatctatca |
471 |
Q |
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| T |
9998100 |
ttctgctaagataagagagaaggggagttggtgagtttctatttccgttaatatctatca |
9998041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 538 - 653
Target Start/End: Complemental strand, 9997974 - 9997859
Alignment:
| Q |
538 |
cttgcatgatcaaacgcaagtgtagcatttgataattctagacaacaaattttcttgttcacttcaaaatcgttttctaaagtatactaatagctagttt |
637 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9997974 |
cttgcatgatcaaacgcaagtgtagcatttgataattctagacaacaaattttcttgttcacttcaaaatcgttttctaaagtatactaatagctagttt |
9997875 |
T |
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| Q |
638 |
tcggtaacacccatgc |
653 |
Q |
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| T |
9997874 |
tcggtaacacccatgc |
9997859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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